SLD492
Library SL
(Link to library)
Clone ID SLD492
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11049-1
Original site URL
Representative seq. ID SLD492P
(Link to Original site)
Representative DNA sequence
>SLD492 (SLD492Q) /CSM/SL/SLD4-D/SLD492Q.Seq.d/
ATTTGATGATGATATTCCAACAGCCGATGAAGAAGGTGACTTTTTCGAAATCTATGAACC
AGTATTTGATAGTAACTCTCGTTGGTCAAACGTTCAACCAGTACCAAAACTTGGTGATAT
GGATACTCCATATGATAAGGTTGTTAAATTCTATAACTTTTGGTGGTCATTCAAGTCATG
GAGAGATTTCACATTTGAAGATGATCATGATTTAGATAATGCAGACTCTCGTGAAGAGAA
ACGTTGGATGGAGAGAGAGAATGAAAAGAAACGTGTCAAACAAAGAAAGATCGAAGCTGC
ACGTATTCAAGATCTCGCCAATCTCGCCTACAAAAAAGATCCACGTAXXXXXXXXXXGCA
AAGAAAAGCATTACTCAACAATAAGAAAGAAGCTAAACCAGAGAGACCATGGACTGAAGA
TGAACTCCATCTCTTGGCTAAAGCCATCCAAAAGTTCCCACCAGGTGTTACCAAACGTTG
GGAATCCGTTGCATCTTGTATTCCAACTCGTTCTTTGAAAGACGTTATCGCCAAAGCTAA
AACCTCACAACCAACTCAACAACAATCTTTCTCAAAACCAGAAGCTGCTCCATCAGGTTC
CGATTATGATAAATTAAAAGCCAAAGTTGGTCATATGGAAATTAAATCTGAACTCAGTTC
AAAAGTTGACCTCGGTCAATATCCAGTAGGTACCACTTCAAATGGCACTGAATCAACCAC
TACCGCCACCGCTCCATCAACTGTCGACACCGCCAAACCAGCCGCTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 2.23
Translated Amino Acid sequence
FDDDIPTADEEGDFFEIYEPVFDSNSRWSNVQPVPKLGDMDTPYDKVVKFYNFWWSFKSW
RDFTFEDDHDLDNADSREEKRWMERENEKKRVKQRKIEAARIQDLANLAYKKDPR---

---QRKALLNNKKEAKPERPWTEDELHLLAKAIQKFPPGVTKRWESVASCIPTRSLKDVI
AKAKTSQPTQQQSFSKPEAAPSGSDYDKLKAKVGHMEIKSELSSKVDLGQYPVGTTSNGT
ESTTTATAPSTVDTAKPAAKKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
i***ysnsr*rr*lfrnl*tsi***lslvkrststktw*ygysi**gc*il*llvviqvm
erfhi*r*s*fr*crls*retldgere*ketcqtkkdrsctysrsrqsrlqkrst---

---akksitqq*ers*tretmd*r*tpslg*shpkvptrcyqtlgircilysnsfferry
rqs*nlttnsttiflktrscsirfrl**iksqswsygn*i*tqfks*prsissryhfkwh
*inhyrhrsincrhrqtsr*kkkkkkkkkkkkkk

Frame B:
FDDDIPTADEEGDFFEIYEPVFDSNSRWSNVQPVPKLGDMDTPYDKVVKFYNFWWSFKSW
RDFTFEDDHDLDNADSREEKRWMERENEKKRVKQRKIEAARIQDLANLAYKKDPR---

---QRKALLNNKKEAKPERPWTEDELHLLAKAIQKFPPGVTKRWESVASCIPTRSLKDVI
AKAKTSQPTQQQSFSKPEAAPSGSDYDKLKAKVGHMEIKSELSSKVDLGQYPVGTTSNGT
ESTTTATAPSTVDTAKPAAKKKKKKKKKKKKKKK

Frame C:
lmmifqqpmkkvtfsksmnqylivtlvgqtfnqyqnlviwilhmirllnsitfgghsshg
eishlkmimi*imqtlvkrnvgwrermkrnvsnkersklhvfkispisptkkihv---

---kekhystirkklnqrdhglkmnsiswlkpsksshqvlpnvgnplhlvfqlvl*ktls
pklkphnqlnnnlsqnqkllhqvpimin*kpklviwklnlnsvqkltsvniq*vplqmal
nqplppplhqlstppnqplkkkkkkkkkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLD492 (SLD492Q) /CSM/SL/SLD4-D/SLD492Q.Seq.d/ 1459 0.0
AFN547 (AFN547Q) /CSM/AF/AFN5-B/AFN547Q.Seq.d/ 811 0.0
SLE172 (SLE172Q) /CSM/SL/SLE1-C/SLE172Q.Seq.d/ 805 0.0
VHJ195 (VHJ195Q) /CSM/VH/VHJ1-D/VHJ195Q.Seq.d/ 803 0.0
SLA508 (SLA508Q) /CSM/SL/SLA5-A/SLA508Q.Seq.d/ 74 4e-12
VSK435 (VSK435Q) /CSM/VS/VSK4-B/VSK435Q.Seq.d/ 38 0.20
VFI629 (VFI629Q) /CSM/VF/VFI6-B/VFI629Q.Seq.d/ 38 0.20
VFH676 (VFH676Q) /CSM/VF/VFH6-D/VFH676Q.Seq.d/ 38 0.20
SFC371 (SFC371Q) /CSM/SF/SFC3-C/SFC371Q.Seq.d/ 38 0.20
CHO354 (CHO354Q) /CSM/CH/CHO3-C/CHO354Q.Seq.d/ 38 0.20

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052538) Dictyostelium discoideum slug cDNA, clone SLD492. 809 0.0 1
(BJ345667) Dictyostelium discoideum cDNA clone:dda28m11, 3' ... 809 0.0 1
(AU034677) Dictyostelium discoideum slug cDNA, clone SLE172. 805 0.0 1
(BJ442455) Dictyostelium discoideum cDNA clone:ddv49m23, 3' ... 801 0.0 1
(AU061182) Dictyostelium discoideum slug cDNA, clone SLD492. 688 0.0 1
(C83939) Dictyostelium discoideum slug cDNA, clone SLA508. 66 2e-06 1
(BJ328502) Dictyostelium discoideum cDNA clone:dda28m11, 5' ... 64 9e-06 1
(BJ423645) Dictyostelium discoideum cDNA clone:ddv49m23, 5' ... 60 1e-04 1
(DU965149) 235372 Tomato MboI BAC Library Solanum lycopersic... 48 0.51 1
(FK257973) USDA-FP_193936 Asian citrus psyllid midgut (Hemip... 38 4.9 2
dna update 2009. 3.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC008153_11(AC008153|pid:none) Arabidopsis thaliana chromosome 3... 150 4e-35
CR855089_4(CR855089|pid:none) Oryza sativa genomic DNA, chromoso... 145 1e-33
AM480588_1(AM480588|pid:none) Vitis vinifera contig VV78X107304.... 141 3e-32
AC145329_5(AC145329|pid:none) Medicago truncatula clone mth2-8i2... 139 8e-32
AB106868_1(AB106868|pid:none) Lilium longiflorum LlglsA mRNA for... 137 4e-31
AF110134_1(AF110134|pid:none) Volvox carteri f. nagariensis GlsA... 131 3e-29
(Q1RMH9) RecName: Full=DnaJ homolog subfamily C member 2; AltNam... 128 2e-28
BC139751_1(BC139751|pid:none) Homo sapiens DnaJ (Hsp40) homolog,... 128 2e-28
(Q99543) RecName: Full=DnaJ homolog subfamily C member 2; AltNam... 127 4e-28
(P54103) RecName: Full=DnaJ homolog subfamily C member 2; AltNam... 126 7e-28
protein update 2009. 6. 2
PSORT

psg: 0.75 gvh: 0.32 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.78 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: mitochondrial

>> prediction for SLD492 is nuc

5' end seq. ID SLD492F
5' end seq.
>SLD492F.Seq
ATTTGATGATGATATTCCAACAGCCGATGAAGAAGGTGACTTTTTCGAAATCTATGAACC
AGTATTTGATAGTAACTCTCGTTGGTCAAACGTTCAACCAGTACCAAAACTTGGTGATAT
GGATACTCCATATGATAAGGTTGTTAAATTCTATAACTTTTGGTGGTCATTCAAGTCATG
GAGAGATTTCACATTTGAAGATGATCATGATTTAGATAATGCAGACTCTCGTGAAGAGAA
ACGTTGGATGGAGAGAGAGAATGAAAAGAAACGTGTCAAACAAAGAAAGATCGAAGCTGC
ACGTATTCAAGATCTCGCCAATCTCGCCTACAAAAAAGATCCACGTA----------
Length of 5' end seq. 347
3' end seq. ID SLD492Z
3' end seq.
>SLD492Z.Seq
----------GCAAAGAAAAGCATTACTCAACAATAAGAAAGAAGCTAAACCAGAGAGAC
CATGGACTGAAGATGAACTCCATCTCTTGGCTAAAGCCATCCAAAAGTTCCCACCAGGTG
TTACCAAACGTTGGGAATCCGTTGCATCTTGTATTCCAACTCGTTCTTTGAAAGACGTTA
TCGCCAAAGCTAAAACCTCACAACCAACTCAACAACAATCTTTCTCAAAACCAGAAGCTG
CTCCATCAGGTTCCGATTATGATAAATTAAAAGCCAAAGTTGGTCATATGGAAATTAAAT
CTGAACTCAGTTCAAAAGTTGACCTCGGTCAATATCCAGTAGGTACCACTTCAAATGGCA
CTGAATCAACCACTACCGCCACCGCTCCATCAACTGTCGACACCGCCAAACCAGCCGCTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 454
Connected seq. ID SLD492P
Connected seq.
>SLD492P.Seq
ATTTGATGATGATATTCCAACAGCCGATGAAGAAGGTGACTTTTTCGAAATCTATGAACC
AGTATTTGATAGTAACTCTCGTTGGTCAAACGTTCAACCAGTACCAAAACTTGGTGATAT
GGATACTCCATATGATAAGGTTGTTAAATTCTATAACTTTTGGTGGTCATTCAAGTCATG
GAGAGATTTCACATTTGAAGATGATCATGATTTAGATAATGCAGACTCTCGTGAAGAGAA
ACGTTGGATGGAGAGAGAGAATGAAAAGAAACGTGTCAAACAAAGAAAGATCGAAGCTGC
ACGTATTCAAGATCTCGCCAATCTCGCCTACAAAAAAGATCCACGTA----------GCA
AAGAAAAGCATTACTCAACAATAAGAAAGAAGCTAAACCAGAGAGACCATGGACTGAAGA
TGAACTCCATCTCTTGGCTAAAGCCATCCAAAAGTTCCCACCAGGTGTTACCAAACGTTG
GGAATCCGTTGCATCTTGTATTCCAACTCGTTCTTTGAAAGACGTTATCGCCAAAGCTAA
AACCTCACAACCAACTCAACAACAATCTTTCTCAAAACCAGAAGCTGCTCCATCAGGTTC
CGATTATGATAAATTAAAAGCCAAAGTTGGTCATATGGAAATTAAATCTGAACTCAGTTC
AAAAGTTGACCTCGGTCAATATCCAGTAGGTACCACTTCAAATGGCACTGAATCAACCAC
TACCGCCACCGCTCCATCAACTGTCGACACCGCCAAACCAGCCGCTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 801
Full length Seq ID -
Full length Seq. -
Length of full length seq. -