NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD447
Library SL
(Link to library)
Clone ID SLD447
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12870-1
Original site URL
Representative seq. ID SLD447F
(Link to Original site)
Representative DNA sequence 
>SLD447 (SLD447Q) /CSM/SL/SLD4-B/SLD447Q.Seq.d/
GTACCATTTCATTCAAGGTTATACCGCCAAAGTTGCCGGTACTGAAGTTGGTGTCACCGA
ACCAACTGCAACCTTTTCAAGTTGTTATGGTGAACCATTCATCGTATGGCATCCAACCAA
ATACGCTGAAATGTTGGCTTCTCAACTCCATAAACATTCAGCTCGTGCTTGGTTAATTAA
TACTGGTTGGACTGGTGGTTCTCATGGTGTTGGTTCTCGTATTAAATTGGCCTACACTCG
TGCCATCATCGATGCCATTCACAGTGGAGAACTTGAAAAAATTCCAACCACTAAAATGGA
TXXXXXXXXXX
sequence update 1999. 2.23
Translated Amino Acid sequence 
YHFIQGYTAKVAGTEVGVTEPTATFSSCYGEPFIVWHPTKYAEMLASQLHKHSARAWLIN
TGWTGGSHGVGSRIKLAYTRAIIDAIHSGELEKIPTTKM---
Translated Amino Acid sequence (All Frames) 
Frame A:
vpfhsrlyrqscry*swchrtncnlfkllw*tihrmasnqir*nvgfstp*tfssclvn*
ywldwwfswcwfsy*iglhschhrchsqwrt*knsnh*ng---


Frame B:
YHFIQGYTAKVAGTEVGVTEPTATFSSCYGEPFIVWHPTKYAEMLASQLHKHSARAWLIN
TGWTGGSHGVGSRIKLAYTRAIIDAIHSGELEKIPTTKM---


Frame C:
tisfkvippklpvlklvspnqlqpfqvvmvnhssygiqpntlkcwllnsiniqlvlg*li
lvglvvlmvlvlvlnwptlvpssmpftvenlkkfqplkw---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD447 (SLD447Q) /CSM/SL/SLD4-B/SLD447Q.Seq.d/                        597   e-170
SFF434 (SFF434Q) /CSM/SF/SFF4-B/SFF434Q.Seq.d/                        597   e-170
CHD612 (CHD612Q) /CSM/CH/CHD6-A/CHD612Q.Seq.d/                        597   e-170
CHA433 (CHA433Q) /CSM/CH/CHA4-B/CHA433Q.Seq.d/                        597   e-170
CFG166 (CFG166Q) /CSM/CF/CFG1-C/CFG166Q.Seq.d/                        597   e-170
CFB382 (CFB382Q) /CSM/CF/CFB3-D/CFB382Q.Seq.d/                        597   e-170
CFB335 (CFB335Q) /CSM/CF/CFB3-B/CFB335Q.Seq.d/                        597   e-170
CFA501 (CFA501Q) /CSM/CF/CFA5-A/CFA501Q.Seq.d/                        597   e-170
AFO776 (AFO776Q) /CSM/AF/AFO7-D/AFO776Q.Seq.d/                        597   e-170
AFN344 (AFN344Q) /CSM/AF/AFN3-B/AFN344Q.Seq.d/                        597   e-170
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...   597   e-167  1
(AU061163) Dictyostelium discoideum slug cDNA, clone SLD447.      597   e-167  1
(BJ398162) Dictyostelium discoideum cDNA clone:dds11d10, 3' ...   597   e-167  1
(BJ377011) Dictyostelium discoideum cDNA clone:ddc22b10, 3' ...   597   e-167  1
(BJ376565) Dictyostelium discoideum cDNA clone:ddc29g04, 3' ...   597   e-167  1
(BJ373585) Dictyostelium discoideum cDNA clone:ddc3d21, 3' e...   597   e-167  1
(BJ373492) Dictyostelium discoideum cDNA clone:ddc3f09, 3' e...   597   e-167  1
(BJ373356) Dictyostelium discoideum cDNA clone:ddc2a01, 3' e...   597   e-167  1
(BJ372643) Dictyostelium discoideum cDNA clone:ddc13c17, 3' ...   597   e-167  1
(BJ347520) Dictyostelium discoideum cDNA clone:dda27h11, 3' ...   597   e-167  1
dna update 2009. 3.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050473_1(AB050473|pid:none) Flaveria pringlei pck3-11 mRNA for...   145   3e-34
AB050471_1(AB050471|pid:none) Flaveria trinervia pck4-9 mRNA for...   145   6e-34
FM211885_1(FM211885|pid:none) Digitaria sanguinalis partial mRNA...   144   7e-34
FM211840_1(FM211840|pid:none) Digitaria sanguinalis partial pck ...   144   7e-34
AY007226_1(AY007226|pid:none) Lycopersicon esculentum phosphoeno...   142   3e-33
FM211865_1(FM211865|pid:none) Paspalum quadrifarium partial pckF...   142   5e-33
FM211843_1(FM211843|pid:none) Eleusine indica partial pck gene f...   142   5e-33
AC099040_19(AC099040|pid:none) Oryza sativa chromosome 10 BAC OS...   141   6e-33
FM211845_1(FM211845|pid:none) Enteropogon prieurii partial pckB ...   141   8e-33
FM211831_1(FM211831|pid:none) Chloris gayana partial pckB gene f...   141   8e-33
protein update 2009. 6. 2
PSORT 

 psg: 0.80  gvh: 0.48  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLD447 is cyt
5' end seq. ID SLD447F
5' end seq. 
>SLD447F.Seq
GTACCATTTCATTCAAGGTTATACCGCCAAAGTTGCCGGTACTGAAGTTGGTGTCACCGA
ACCAACTGCAACCTTTTCAAGTTGTTATGGTGAACCATTCATCGTATGGCATCCAACCAA
ATACGCTGAAATGTTGGCTTCTCAACTCCATAAACATTCAGCTCGTGCTTGGTTAATTAA
TACTGGTTGGACTGGTGGTTCTCATGGTGTTGGTTCTCGTATTAAATTGGCCTACACTCG
TGCCATCATCGATGCCATTCACAGTGGAGAACTTGAAAAAATTCCAACCACTAAAATGGA
T----------
Length of 5' end seq. 301
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -