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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD420
Library SL
(Link to library)
Clone ID SLD420
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16325-1
Original site URL
Representative seq. ID SLD420E
(Link to Original site)
Representative DNA sequence 
>SLD420 (SLD420Q) /CSM/SL/SLD4-A/SLD420Q.Seq.d/
GTACGTGGTAAGATCTATTGTATTCCAAAGACCACCTGTGATCAAGTACGTTGTCCAAGA
AAACACCATTGTGAATGCAATAGAAAAGGTCAAGTTTTCTGTGTTCCAGATTGTCCAAAA
TTAACTTGTAAACAAGTTGGTTGCCCAGAAAACCATGAATGCGTTTCAAGACGTGGTGAA
CTCCATTGTGTATACGTTAGACCACCAACAGGTAGATGGGGTGATGATCTCTCAGATTTA
GGTTACAATCAAGCAAGTGTTGAAGCTGCAATTGATGCTTATGAAGCCCAAAGGGGTCAA
AGACCACATAATAATATTCCATCAAACAATTTACATCAAGAAAACAATGATAATTTGGGT
GATGGTTTTTATGATGGTGTTGAAATTGGTTTCGCTGACGGAGGTTTCGACGTAAACGAT
CTCAATGGTTTTTA
sequence update 1998. 6.15
Translated Amino Acid sequence 
VRGKIYCIPKTTCDQVRCPRKHHCECNRKGQVFCVPDCPKLTCKQVGCPENHECVSRRGE
LHCVYVRPPTGRWGDDLSDLGYNQASVEAAIDAYEAQRGQRPHNNIPSNNLHQENNDNLG
DGFYDGVEIGFADGGFDVNDLNGF
Translated Amino Acid sequence (All Frames) 
Frame A:
VRGKIYCIPKTTCDQVRCPRKHHCECNRKGQVFCVPDCPKLTCKQVGCPENHECVSRRGE
LHCVYVRPPTGRWGDDLSDLGYNQASVEAAIDAYEAQRGQRPHNNIPSNNLHQENNDNLG
DGFYDGVEIGFADGGFDVNDLNGF


Frame B:
yvvrsivfqrppvikyvvqentivnaiekvkfsvfqivqn*lvnklvaqktmnafqdvvn
sivytldhqqvdgvmisqi*vtikqvlklqlmlmkpkgvkdhiiifhqtiyikktmiiwv
mvfmmvlklvsltevst*tismvf


Frame C:
tw*dllyskdhl*sstlskktpl*mq*krssflcsrlskinl*tswlprkp*mrfktw*t
plcir*ttnr*mg**slrfrlqsskc*scn*cl*spkgsktt**ysikqftsrkq**fg*
wfl*wc*nwfr*rrfrrkrsqwfl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI370 (SLI370Q) /CSM/SL/SLI3-C/SLI370Q.Seq.d/                        860   0.0
SLI291 (SLI291Q) /CSM/SL/SLI2-D/SLI291Q.Seq.d/                        860   0.0
SLI170 (SLI170Q) /CSM/SL/SLI1-C/SLI170Q.Seq.d/                        860   0.0
SLG187 (SLG187Q) /CSM/SL/SLG1-D/SLG187Q.Seq.d/                        860   0.0
SLE234 (SLE234Q) /CSM/SL/SLE2-B/SLE234Q.Seq.d/                        860   0.0
SLE215 (SLE215Q) /CSM/SL/SLE2-A/SLE215Q.Seq.d/                        860   0.0
SLD420 (SLD420Q) /CSM/SL/SLD4-A/SLD420Q.Seq.d/                        860   0.0
SLC695 (SLC695Q) /CSM/SL/SLC6-D/SLC695Q.Seq.d/                        860   0.0
SLC649 (SLC649Q) /CSM/SL/SLC6-C/SLC649Q.Seq.d/                        860   0.0
SLC537 (SLC537Q) /CSM/SL/SLC5-B/SLC537Q.Seq.d/                        860   0.0
own update 2004. 8. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF066071) Dictyostelium discoideum SP85 (pspB) gene, comple...   860   0.0    1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...   860   0.0    1
(AU053311) Dictyostelium discoideum slug cDNA, clone SLI370.      860   0.0    1
(AU053270) Dictyostelium discoideum slug cDNA, clone SLI291.      860   0.0    1
(AU053222) Dictyostelium discoideum slug cDNA, clone SLI170.      860   0.0    1
(AU052495) Dictyostelium discoideum slug cDNA, clone SLD420.      860   0.0    1
(AU052289) Dictyostelium discoideum slug cDNA, clone SLA746.      860   0.0    1
(AU039689) Dictyostelium discoideum slug cDNA, clone SLG187.      860   0.0    1
(AU039504) Dictyostelium discoideum slug cDNA, clone SLA756.      860   0.0    1
(AU034719) Dictyostelium discoideum slug cDNA, clone SLE234.      860   0.0    1
dna update 2009. 3.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...   323   2e-87
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...   191   7e-48
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    71   1e-11
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        49   5e-05
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    49   5e-05
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    47   2e-04
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    45   8e-04
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    43   0.004
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    40   0.033
AY574051_1(AY574051|pid:none) Ictalurus furcatus follistatin mRN...    39   0.044
protein update 2009. 7. 5
PSORT 

 psg: 0.58  gvh: 0.39  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLD420 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLD420E
Full length Seq. 
>SLD420E.Seq
GTACGTGGTAAGATCTATTGTATTCCAAAGACCACCTGTGATCAAGTACGTTGTCCAAGA
AAACACCATTGTGAATGCAATAGAAAAGGTCAAGTTTTCTGTGTTCCAGATTGTCCAAAA
TTAACTTGTAAACAAGTTGGTTGCCCAGAAAACCATGAATGCGTTTCAAGACGTGGTGAA
CTCCATTGTGTATACGTTAGACCACCAACAGGTAGATGGGGTGATGATCTCTCAGATTTA
GGTTACAATCAAGCAAGTGTTGAAGCTGCAATTGATGCTTATGAAGCCCAAAGGGGTCAA
AGACCACATAATAATATTCCATCAAACAATTTACATCAAGAAAACAATGATAATTTGGGT
GATGGTTTTTATGATGGTGTTGAAATTGGTTTCGCTGACGGAGGTTTCGACGTAAACGAT
CTCAATGGTTTTTA
Length of full length seq. 434