SLD371
Library SL
(Link to library)
Clone ID SLD371
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15851-1
Original site URL
Representative seq. ID SLD371Z
(Link to Original site)
Representative DNA sequence
>SLD371 (SLD371Q) /CSM/SL/SLD3-C/SLD371Q.Seq.d/
XXXXXXXXXXTCGTTTCATCGGGTGAGGAGTTTTCATTATCAGTTCCAATTCAAATTCCT
TTGATTCCAAATAAATGTGAAGAATATTTAGTTGGTGAATATTGGAGAATTTGTACCTCT
GATGGTGTTTACTTTGGTGATCAACTTTGGATTAGTTTGGTTGTAAAGAATAGAGAAATG
ATTTCTTTGTCTGATCAATTTAATAAATTATCAAGTCAATGTAATAGTACCTCACAACAA
AATCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAAAAAACTACAACCACAACCTCAACCTCATGTACATGTAGAAATAACAATTTAATAAGT
TGTAATTGTCAAGTTAACAAGAATTCAACAAATTTCAATAGTTGCTTAAATTAAAAAAAA
GAAAAAAAAAAAAC
sequence update 1998. 6.15
Translated Amino Acid sequence
---VSSGEEFSLSVPIQIPLIPNKCEEYLVGEYWRICTSDGVYFGDQLWISLVVKNREMI
SLSDQFNKLSSQCNSTSQQNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
KTTTTTSTSCTCRNNNLISCNCQVNKNSTNFNSCLN*kkekkk


Translated Amino Acid sequence (All Frames)
Frame A:
---rfig*gvfiissnsnsfdsk*m*rifsw*ilenlyl*wcllw*stld*fgcke*rnd
ffv*si**iiksm**ylttksttttttttttttttttttttttttttttttttttttttt
knynhnlnlmym*k*qfnkl*lss*qefnkfq*llklkkrkkkn


Frame B:
---VSSGEEFSLSVPIQIPLIPNKCEEYLVGEYWRICTSDGVYFGDQLWISLVVKNREMI
SLSDQFNKLSSQCNSTSQQNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
KTTTTTSTSCTCRNNNLISCNCQVNKNSTNFNSCLN*kkekkk


Frame C:
---fhrvrsfhyqfqfkfl*fqinvkni*lvnigefvplmvftlvinfglvwl*riek*f
lclinlinyqvnvivphnkinnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnk
klqpqpqphvhveiti**vvivkltriqqisiva*ikkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLD371 (SLD371Q) /CSM/SL/SLD3-C/SLD371Q.Seq.d/ 442 e-123
SLA616 (SLA616Q) /CSM/SL/SLA6-A/SLA616Q.Seq.d/ 442 e-123
VSE469 (VSE469Q) /CSM/VS/VSE4-C/VSE469Q.Seq.d/ 216 2e-55
SHL431 (SHL431Q) /CSM/SH/SHL4-B/SHL431Q.Seq.d/ 190 1e-47
SHB420 (SHB420Q) /CSM/SH/SHB4-A/SHB420Q.Seq.d/ 133 3e-30
VHM458 (VHM458Q) /CSM/VH/VHM4-C/VHM458Q.Seq.d/ 40 0.031
VHL554 (VHL554Q) /CSM/VH/VHL5-C/VHL554Q.Seq.d/ 40 0.031
VHD681 (VHD681Q) /CSM/VH/VHD6-D/VHD681Q.Seq.d/ 40 0.031
SFC835 (SFC835Q) /CSM/SF/SFC8-B/SFC835Q.Seq.d/ 40 0.031
VSK195 (VSK195Q) /CSM/VS/VSK1-D/VSK195Q.Seq.d/ 38 0.12

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052467) Dictyostelium discoideum slug cDNA, clone SLD371. 442 e-163 2
(AU033325) Dictyostelium discoideum slug cDNA, clone SLA616. 442 e-158 2
(AU263131) Dictyostelium discoideum vegetative cDNA clone:VS... 170 1e-55 2
(BJ408624) Dictyostelium discoideum cDNA clone:dds46n08, 3' ... 145 2e-30 1
(BJ403730) Dictyostelium discoideum cDNA clone:dds26h06, 3' ... 68 3e-15 2
(EC745878) PSE00002215 rw_mgpallid Polysphondylium pallidum ... 50 0.078 1
(ED660746) GM_WBa0083D22.f GM_WBa Glycine max genomic clone ... 46 1.2 1
(CN564988) tag22f08.y1 Hydra EST -Kiel 1 Hydra vulgaris cDNA... 38 1.3 2
(DN302284) PL04025A2C08 cDNA from sexually mature hermaphodi... 34 3.2 2
(DN308666) PL05017A2B08 cDNA from sexually mature hermaphodi... 34 3.2 2
dna update 2009. 3.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC106330_1(BC106330|pid:none) Xenopus laevis hypothetical protei... 42 0.008
BC166160_1(BC166160|pid:none) Xenopus tropicalis chromosome 6 op... 42 0.008
(Q5F3N9) RecName: Full=Uncharacterized protein C6orf106 homolog;... 41 0.017
BC132324_1(BC132324|pid:none) Mus musculus DNA segment, Chr 17, ... 40 0.022
BC112320_1(BC112320|pid:none) Rattus norvegicus similar to chrom... 40 0.022
BC137573_1(BC137573|pid:none) Mus musculus DNA segment, Chr 17, ... 40 0.022
BT081145_1(BT081145|pid:none) Caligus clemensi clone ccle-evs-51... 40 0.029
(Q3TT38) RecName: Full=Uncharacterized protein C6orf106 homolog;... 37 0.32
CU640366_1319(CU640366|pid:none) Podospora anserina genomic DNA ... 36 0.55
AL035356_11(AL035356|pid:none) Arabidopsis thaliana DNA chromoso... 35 0.72
protein update 2009. 6. 2
PSORT

psg: 0.75 gvh: 0.31 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SLD371 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD371Z
3' end seq.
>SLD371Z.Seq
----------TCGTTTCATCGGGTGAGGAGTTTTCATTATCAGTTCCAATTCAAATTCCT
TTGATTCCAAATAAATGTGAAGAATATTTAGTTGGTGAATATTGGAGAATTTGTACCTCT
GATGGTGTTTACTTTGGTGATCAACTTTGGATTAGTTTGGTTGTAAAGAATAGAGAAATG
ATTTCTTTGTCTGATCAATTTAATAAATTATCAAGTCAATGTAATAGTACCTCACAACAA
AATCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAAAAAACTACAACCACAACCTCAACCTCATGTACATGTAGAAATAACAATTTAATAAGT
TGTAATTGTCAAGTTAACAAGAATTCAACAAATTTCAATAGTTGCTTAAATTAAAAAAAA
GAAAAAAAAAAAAC
Length of 3' end seq. 484
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -