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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD341
Library SL
(Link to library)
Clone ID SLD341
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16354-1
Original site URL
Representative seq. ID SLD341E
(Link to Original site)
Representative DNA sequence 
>SLD341 (SLD341Q) /CSM/SL/SLD3-B/SLD341Q.Seq.d/
CGGACGCGTGGGTAGAAAATATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGT
AGAGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGC
TGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTT
TATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAA
GGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTT
GAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGT
AAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGA
ATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAA
ATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCA
ACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCTT
TTAAAAATA
sequence update 1999. 7.14
Translated Amino Acid sequence 
grvgrky*n*KMDCAITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMF
ISLDKDKDGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWV
NKNNPDAIAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinq
hl*fsflkkfk*ink*kiif*k
Translated Amino Acid sequence (All Frames) 
Frame A:
rtrg*kilklknglcnykrcrgyvkki*fkw*w*yyi**scktfegnrfkrsitcclfnv
yfs**g*gwnyfnkrdswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*smqlg
k*kqsrcncstydc*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*s
tfiififkki*ink*iknnllki


Frame B:
grvgrky*n*KMDCAITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMF
ISLDKDKDGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWV
NKNNPDAIAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinq
hl*fsflkkfk*ink*kiif*k


Frame C:
dawvenikikkwivqlqkm*ric*enliqmvmvilhlmkl*nv*rkpvqkihyvlplqcl
fllirirmelfq*krfmairlmllqrnckrqlttsvtts*kamtlirmegshgmkyaig*
iktiqmqllhl*llkislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*llin
iynfhf*knlnk*inkk*sfkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD341 (SLD341Q) /CSM/SL/SLD3-B/SLD341Q.Seq.d/                       1110   0.0
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                       1086   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                       1086   0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/                       1086   0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                       1086   0.0
SSK751 (SSK751Q) /CSM/SS/SSK7-C/SSK751Q.Seq.d/                       1086   0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/                       1086   0.0
SSH153 (SSH153Q) /CSM/SS/SSH1-C/SSH153Q.Seq.d/                       1086   0.0
SSG852 (SSG852Q) /CSM/SS/SSG8-C/SSG852Q.Seq.d/                       1086   0.0
SSG624 (SSG624Q) /CSM/SS/SSG6-A/SSG624Q.Seq.d/                       1086   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039116) Dictyostelium discoideum slug cDNA, clone SSM408.      965   0.0    1
(AU039029) Dictyostelium discoideum slug cDNA, clone SSM294.      965   0.0    1
(AU038009) Dictyostelium discoideum slug cDNA, clone SSH153.      965   0.0    1
(AU037726) Dictyostelium discoideum slug cDNA, clone SSE221.      965   0.0    1
(C94491) Dictyostelium discoideum slug cDNA, clone SSL192.        965   0.0    1
(C94487) Dictyostelium discoideum slug cDNA, clone SSL187.        965   0.0    1
(C94276) Dictyostelium discoideum slug cDNA, clone SSK729.        965   0.0    1
(C92993) Dictyostelium discoideum slug cDNA, clone SSF426.        965   0.0    1
(C92691) Dictyostelium discoideum slug cDNA, clone SSF848.        965   0.0    1
(C92510) Dictyostelium discoideum slug cDNA, clone SSE502.        965   0.0    1
dna update 2009. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    79   8e-14
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    69   8e-11
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...    69   1e-10
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...    69   1e-10
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    67   3e-10
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     67   3e-10
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha;             57   4e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    56   9e-07
EF523472_1(EF523472|pid:none) Synthetic construct putative aller...    55   2e-06
FN357341_31(FN357341|pid:none) Schistosoma mansoni genome sequen...    55   2e-06
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLD341 is nuc
5' end seq. ID SLD341F
5' end seq. 
>SLD341F.Seq
CGGACGCGTGGGTAGAAAATATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGT
AGAGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGC
TGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTT
TATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAA
GGCTGATGTTGCTGCAA----------
Length of 5' end seq. 257
3' end seq. ID SLD341Z
3' end seq. 
>SLD341Z.Seq
----------TCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTGAA
GGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAA
GGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGC
AAAGAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGACAC
TGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCC
AGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAA
TGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCC
AGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTC
ATTTTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCTTTTAAAAATA
Length of 3' end seq. 524
Connected seq. ID SLD341P
Connected seq. 
>SLD341P.Seq
CGGACGCGTGGGTAGAAAATATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGT
AGAGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGC
TGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTT
TATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAA
GGCTGATGTTGCTGCAA----------TCAAATGGTGATGGTAATATTACATTTGATGAA
GCTGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATG
TTTATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCAT
AAGGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTC
TTGAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGG
GTAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGT
GAATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACT
AAATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAAT
CAACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATC
TTTTAAAAATA
Length of connected seq. 781
Full length Seq ID SLD341E
Full length Seq. 
>SLD341E.Seq
CGGACGCGTGGGTAGAAAATATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGT
AGAGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGC
TGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTT
TATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAA
GGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTT
GAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGT
AAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGA
ATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAA
ATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCA
ACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCTT
TTAAAAATA
Length of full length seq. 609