>AFK258 (AFK258Q) /CSM/AF/AFK2-C/AFK258Q.Seq.d/
XXXXXXXXXXTCTTCAATAGCAGCTAAAATACCCGGTAGAATCGGTAAACAATGCAGAGA
GAGATGGTTCAATCATCTCTCACCAGAGGTTAGAAAAACAAATTGGACCCCTGAAGAGGA
TAAAATTATCATTGATGCTCACGCTTCGTTGGGTAATAAATGGACTGCAATCTCTAAAAT
GTTGGATGGTAGACCTGCAAATGCAATTAAAAATCATTGGAATTCTACCCTACTCAAAAA
AATTGGTGGTGATTCAAAATCTTTAAACAAAGAGAAAGATGATGACGACGATGACGATGA
AGATGCAGAGGATGGTAGTTCTCCAGTTTTATCTCCAATATCTTTATATCAATCTTCCTC
TTCAACAACAACAACTACTACAACTACTACAACAAATTCTTCTGAAAAATCAAATATTCC
ACCTTTTGCACTCTCTGGTAGTACAACAACCTCTACAAATAATTTAAATAATAGTACAAA
TAGTACCAATAGTATTAATAATAATAATAACAATAATAACAATAATAACAATAGTAGTAA
TACCAATACAGCAATAACAACCAATGAACCTTTGGTTGCACCAAAAATAATTAGGGCTCA
AACAACCCCAAATTCTTCACCATCTCTTTCTTCCAAAAAGACACATNACAAACAAAAAGT
GCCACAATCTCCAAAAAATTCAAAACAACAACAAACNCAACAACAAACCCAAACC

---SIAAKIPGRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKML
DGRPANAIKNHWNSTLLKKIGGDSKSLNKEKDDDDDDDEDAEDGSSPVLSPISLYQSSSS
TTTTTTTTTTNSSEKSNIPPFALSGSTTTSTNNLNNSTNSTNSINNNNNNNNNNNNSSNT
NTAITTNEPLVAPKIIRAQTTPNSSPSLSSKKTHXKQKVPQSPKNSKQQQTQQQTQT

Frame A:
---lq*qlkypvesvnnaerdgsiishqrlekqigplkriklslmltlrwvinglqslkc
wmvdlqmqlkiigilpyskklvviqnl*tkrkmmttmtmkmqrmvvlqfylqylyinlpl
qqqqllqllqqillknqifhllhslvvqqplqii*iivqivpivliiiitiitiitivvi
piqq*qpmnlwlhqk*lglkqpqilhhlflpkrhxtnkkchnlqkiqnnnkxnnkpk


Frame B:
---fnss*ntr*nr*tmqremvqssltrg*knkldp*rg*nyh*csrfvg**mdcnl*nv
gw*tckcn*kslefyptqknww*fkifkqrer**rr*r*rcrgw*fssfisnifisiflf
nnnnyynyynkff*kikystfctlw*ynnlyk*fk**yk*yq*y*****q**q**q***y
qysnnnq*tfgctknn*gsnnpkfftisffqkdtxqtksatiskkfktttnxttnpn


Frame C:
---SIAAKIPGRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKML
DGRPANAIKNHWNSTLLKKIGGDSKSLNKEKDDDDDDDEDAEDGSSPVLSPISLYQSSSS
TTTTTTTTTTNSSEKSNIPPFALSGSTTTSTNNLNNSTNSTNSINNNNNNNNNNNNSSNT
NTAITTNEPLVAPKIIRAQTTPNSSPSLSSKKTHXKQKVPQSPKNSKQQQTQQQTQT

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC754 (CFC754Q) /CSM/CF/CFC7-C/CFC754Q.Seq.d/                        656   0.0
AFM846 (AFM846Q) /CSM/AF/AFM8-B/AFM846Q.Seq.d/                        656   0.0
AFK258 (AFK258Q) /CSM/AF/AFK2-C/AFK258Q.Seq.d/                        656   0.0
CHJ781 (CHJ781Q) /CSM/CH/CHJ7-D/CHJ781Q.Seq.d/                        361   1e-98
CFB570 (CFB570Q) /CSM/CF/CFB5-C/CFB570Q.Seq.d/                        319   3e-86
CHA436 (CHA436Q) /CSM/CH/CHA4-B/CHA436Q.Seq.d/                        280   3e-74
SLH891 (SLH891Q) /CSM/SL/SLH8-D/SLH891Q.Seq.d/                        210   2e-53
SFK744 (SFK744Q) /CSM/SF/SFK7-B/SFK744Q.Seq.d/                        174   1e-42
SFD595 (SFD595Q) /CSM/SF/SFD5-D/SFD595Q.Seq.d/                        149   7e-35
CFE225 (CFE225Q) /CSM/CF/CFE2-B/CFE225Q.Seq.d/                        149   7e-35

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Z11534|Z11534.1 D.discoideum DNA for Myb DNA-Binding domain.      48  5e-04  2
AV191515|AV191515.1 Caenorhabditis elegans cDNA clone:yk594g6 : 5' end, single read.    56  6e-04  1
D73591|D73591.1 C.elegans cDNA clone yk60g4 : 5' end, single read.    56  6e-04  1
C45420|C45420.1 C.elegans cDNA clone yk393g12 : 5' end, single read.    56  6e-04  1
C40413|C40413.1 C.elegans cDNA clone yk230e7 : 5' end, single read.    56  6e-04  1
C43896|C43896.1 C.elegans cDNA clone yk336c10 : 5' end, single read.    56  6e-04  1
Z68752|Z68752.1 Caenorhabditis elegans cosmid T12G3.              56  0.002  2
CA384064|CA384064.1 664437 NCCCWA 1RT Oncorhynchus mykiss cDNA clone 1RT133A06_C_A03 5', mRNA sequence.    54  0.002  1
AX699712|AX699712.1 Sequence 50 from Patent WO03007699.           40  0.003  2
AB056124|AB056124.1 Nicotiana tabacum NtmybB mRNA for Myb, complete cds.    52  0.010  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54HP1) RecName: Full=Myb-like protein Q;                            278   1e-73
FB798675_1(FB798675|pid:none) Sequence 17948 from Patent WO20080...   119   7e-26
BT065322_1(BT065322|pid:none) Zea mays full-length cDNA clone ZM...   118   2e-25
BC096006_1(BC096006|pid:none) Xenopus tropicalis v-myb myeloblas...   117   3e-25
AB114037_1(AB114037|pid:none) Oryzias latipes c-myb mRNA for tra...   117   3e-25
(P01104) RecName: Full=Transforming protein Myb;  &S74099_3(S740...   117   3e-25
QOYV(A36314;A90831;A94263;A01347)transforming protein myb - avia...   117   3e-25
TVMSMB(A25285;A23939;A93630;I59075;I53245;S07545;I49626) transfo...   117   4e-25
AJ606318_1(AJ606318|pid:none) Homo sapiens mRNA for v-myb myelob...   117   4e-25
M13138_2(M13138|pid:none) Mouse c-myb mRNA with Cas-BR-M viral g...   117   4e-25

 psg: 0.34  gvh: 0.29  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.25  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for AFK258 is nuc

>AFK258Z.Seq
----------TCTTCAATAGCAGCTAAAATACCCGGTAGAATCGGTAAACAATGCAGAGA
GAGATGGTTCAATCATCTCTCACCAGAGGTTAGAAAAACAAATTGGACCCCTGAAGAGGA
TAAAATTATCATTGATGCTCACGCTTCGTTGGGTAATAAATGGACTGCAATCTCTAAAAT
GTTGGATGGTAGACCTGCAAATGCAATTAAAAATCATTGGAATTCTACCCTACTCAAAAA
AATTGGTGGTGATTCAAAATCTTTAAACAAAGAGAAAGATGATGACGACGATGACGATGA
AGATGCAGAGGATGGTAGTTCTCCAGTTTTATCTCCAATATCTTTATATCAATCTTCCTC
TTCAACAACAACAACTACTACAACTACTACAACAAATTCTTCTGAAAAATCAAATATTCC
ACCTTTTGCACTCTCTGGTAGTACAACAACCTCTACAAATAATTTAAATAATAGTACAAA
TAGTACCAATAGTATTAATAATAATAATAACAATAATAACAATAATAACAATAGTAGTAA
TACCAATACAGCAATAACAACCAATGAACCTTTGGTTGCACCAAAAATAATTAGGGCTCA
AACAACCCCAAATTCTTCACCATCTCTTTCTTCCAAAAAGACACATNACAAACAAAAAGT
GCCACAATCTCCAAAAAATTCAAAACAACAACAAACNCAACAACAAACCCAAACC