SLD292
Library SL
(Link to library)
Clone ID SLD292
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U02757-1
Original site URL
Representative seq. ID SLD292E
(Link to Original site)
Representative DNA sequence
>SLD292 (SLD292Q) /CSM/SL/SLD2-D/SLD292Q.Seq.d/
ATTTCAAGAATGAGTCAATCATGGTCAATTGTAATCTATCGGAGATGTATGTGAAATATA
ATGGCATTAAAATGAGACCAAGGGATATTTTCATACAATCGTTCACGAGAATACCTCCAT
TCTTGTTGTTGCAAACCATTGATAACCCATTCCACTATTTAAATGATGTTATGGCAATTG
AAATCGATTATTCAAAAAGACAACCTACAATTGACAAATTTTTAAATCTCATCGATATTA
ATCCAAATAATGCCAATCATTATTTCACATTAGGTTATTATTTAGCCACAAAAGAAACTA
TTCATTTATTAAATGGTTTTCAAATGTGTAAAATATCACTATTCGTTAAAGCAATTGAAT
TGGATCCAAATCATATTCAATCTTATTTTTCACTTTATCTTTATTTACATTTAACTCGTG
ATCCTGATATAACTTTTGTAACTTTATCAAATGGTGAAATCATGTATAAAGAAGATATAG
TTAGAAGAATTGAATCAATGGATAAAAGATTAACTGATTTAATGTTTACTGTTTCAACTG
CAACTACTTCTACCACAACTAATTCAAACAACAACAACAACAATAACAACAACAACACCA
ATACCACTACCACTACCACTACAACCAATGGTATAACAACAACTTCAACAAATAATGGTT
CACCATCATGTTCTTCAATTTCTTCAACTTTTCCAACTTCATAATTAAACCAAATTAAAT
AAATAAAATAAACTAAATTTTTAAAAAAAT
sequence update 1999. 7.28
Translated Amino Acid sequence
FKNESIMVNCNLSEMYVKYNGIKMRPRDIFIQSFTRIPPFLLLQTIDNPFHYLNDVMAIE
IDYSKRQPTIDKFLNLIDINPNNANHYFTLGYYLATKETIHLLNGFQMCKISLFVKAIEL
DPNHIQSYFSLYLYLHLTRDPDITFVTLSNGEIMYKEDIVRRIESMDKRLTDLMFTVSTA
TTSTTTNSNNNNNNNNNNTNTTTTTTTTNGITTTSTNNGSPSCSSISSTFPTS*lnqik*
ik*tkflkk


Translated Amino Acid sequence (All Frames)
Frame A:
isrmsqswsiviyrrcm*nimalk*dqgifsynrsreylhsccckplithsti*mmlwql
ksiiqkdnlqltnf*issiliqimpiiish*vii*pqkklfiy*mvfkcvkyhyslkqln
wiqiifnlifhfifiyi*lvili*ll*lyqmvkscikki*leelnqwikd*li*cllfql
qlllpqliqtttttittttpiplplplqpmv*qqlqqimvhhhvlqflqlfqlhn*tkln
k*nklnf*kn


Frame B:
fqe*vnhgql*sigdvcei*wh*netkgyfhtivhentsilvvanh**piplfk*cygn*
nrlfkkttyn*qifkshry*sk*cqslfhirllfshkrnysfikwfsnv*nitir*sn*i
gsksysilfftlslftfns*s*ynfcnfikw*nhv*rrys*kn*ing*kin*fnvycfnc
nyfyhn*fkqqqqq*qqqhqyhyhyhynqwynnnfnk*wftimffnffnfsnfiikpn*i
nkin*ifkk


Frame C:
FKNESIMVNCNLSEMYVKYNGIKMRPRDIFIQSFTRIPPFLLLQTIDNPFHYLNDVMAIE
IDYSKRQPTIDKFLNLIDINPNNANHYFTLGYYLATKETIHLLNGFQMCKISLFVKAIEL
DPNHIQSYFSLYLYLHLTRDPDITFVTLSNGEIMYKEDIVRRIESMDKRLTDLMFTVSTA
TTSTTTNSNNNNNNNNNNTNTTTTTTTTNGITTTSTNNGSPSCSSISSTFPTS*lnqik*
ik*tkflkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLD292 (SLD292Q) /CSM/SL/SLD2-D/SLD292Q.Seq.d/ 1118 0.0
AFI528 (AFI528Q) /CSM/AF/AFI5-B/AFI528Q.Seq.d/ 1023 0.0
AFI166 (AFI166Q) /CSM/AF/AFI1-C/AFI166Q.Seq.d/ 101 2e-20
VHL179 (VHL179Q) /CSM/VH/VHL1-D/VHL179Q.Seq.d/ 38 0.19
VFL483 (VFL483Q) /CSM/VF/VFL4-D/VFL483Q.Seq.d/ 38 0.19
SSA787 (SSA787Q) /CSM/SS/SSA7-D/SSA787Q.Seq.d/ 38 0.19
CHH180 (CHH180Q) /CSM/CH/CHH1-D/CHH180Q.Seq.d/ 38 0.19
AHC701 (AHC701Q) /CSM/AH/AHC7-A/AHC701Q.Seq.d/ 38 0.19
AHB434 (AHB434Q) /CSM/AH/AHB4-B/AHB434Q.Seq.d/ 38 0.19
VHO250 (VHO250Q) /CSM/VH/VHO2-C/VHO250Q.Seq.d/ 36 0.74

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ344066) Dictyostelium discoideum cDNA clone:dda18g07, 3' ... 1023 0.0 2
(AU052424) Dictyostelium discoideum slug cDNA, clone SLD292. 622 0.0 2
(AU061125) Dictyostelium discoideum slug cDNA, clone SLD292. 607 e-169 1
(BJ326668) Dictyostelium discoideum cDNA clone:dda17c17, 5' ... 101 4e-17 1
(AC160029) Mus musculus 10 BAC RP24-105I7 (Roswell Park Canc... 36 0.083 6
(EK570167) 1095521072682 Global-Ocean-Sampling_GS-32-01-01-1... 48 0.47 1
(EK458476) 1095468807490 Global-Ocean-Sampling_GS-32-01-01-1... 48 0.47 1
(CT009540) M.truncatula DNA sequence from clone MTH2-39B3 on... 42 0.48 3
(AC153992) Mus musculus 6 BAC RP24-116E17 (Roswell Park Canc... 42 0.99 3
(AC101399) Mus musculus clone RP23-119N7, LOW-PASS SEQUENCE ... 34 1.0 2
dna update 2009. 3.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116957_82(AC116957|pid:none) Dictyostelium discoideum chromoso... 54 7e-06
AC116957_86(AC116957|pid:none) Dictyostelium discoideum chromoso... 44 0.004
CP001357_1391(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 42 0.027
AP009552_361(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 41 0.035
CP001357_1843(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 40 0.078
EU016579_19(EU016579|pid:none) Uncultured marine microorganism H... 40 0.10
CP000473_3223(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 37 0.66
CP000251_2972(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 37 0.66
CP001357_2478(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 37 0.66
AP009380_1340(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 37 0.66
protein update 2009. 7. 4
PSORT

psg: 0.81 gvh: 0.34 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SLD292 is cyt

5' end seq. ID SLD292F
5' end seq.
>SLD292F.Seq
ATTTCAAGAATGAGTCAATCATGGTCAATTGTAATCTATCGGAGATGTATGTGAAATATA
ATGGCATTAAAATGAGACCAAGGGATATTTTCATACAATCGTTCACGAGAATACCTCCAT
TCTTGTTGTTGCAAACCATTGATAACCCATTCCACTATTTAAATGATGTTATGGCAATTG
AAATCGATTATTCAAAAAGACAACCTACAATTGACAAATTTTTAAATCTCATCGATATTA
ATCCAAATAATGCCAATCATTATTTCACATTAGGTTATTATTTAGCCACAAAAGAAACTA
TTCATT----------
Length of 5' end seq. 306
3' end seq. ID SLD292Z
3' end seq.
>SLD292Z.Seq
----------TGCCAATCATTATTTCACATTAGGTTATTATTTAGCCACAAAAGAAACTA
TTCATTTATTAAATGGTTTTCAAATGTGTAAAATATCACTATTCGTTAAAGCAATTGAAT
TGGATCCAAATCATATTCAATCTTATTTTTCACTTTATCTTTATTTACATTTAACTCGTG
ATCCTGATATAACTTTTGTAACTTTATCAAATGGTGAAATCATGTATAAAGAAGATATAG
TTAGAAGAATTGAATCAATGGATAAAAGATTAACTGATTTAATGTTTACTGTTTCAACTG
CAACTACTTCTACCACAACTAATTCAAACAACAACAACAACAATAACAACAACAACACCA
ATACCACTACCACTACCACTACAACCAATGGTATAACAACAACTTCAACAAATAATGGTT
CACCATCATGTTCTTCAATTTCTTCAACTTTTCCAACTTCATAATTAAACCAAATTAAAT
AAATAAAATAAACTAAATTTTTAAAAAAAT
Length of 3' end seq. 500
Connected seq. ID SLD292P
Connected seq.
>SLD292P.Seq
ATTTCAAGAATGAGTCAATCATGGTCAATTGTAATCTATCGGAGATGTATGTGAAATATA
ATGGCATTAAAATGAGACCAAGGGATATTTTCATACAATCGTTCACGAGAATACCTCCAT
TCTTGTTGTTGCAAACCATTGATAACCCATTCCACTATTTAAATGATGTTATGGCAATTG
AAATCGATTATTCAAAAAGACAACCTACAATTGACAAATTTTTAAATCTCATCGATATTA
ATCCAAATAATGCCAATCATTATTTCACATTAGGTTATTATTTAGCCACAAAAGAAACTA
TTCATT----------TGCCAATCATTATTTCACATTAGGTTATTATTTAGCCACAAAAG
AAACTATTCATTTATTAAATGGTTTTCAAATGTGTAAAATATCACTATTCGTTAAAGCAA
TTGAATTGGATCCAAATCATATTCAATCTTATTTTTCACTTTATCTTTATTTACATTTAA
CTCGTGATCCTGATATAACTTTTGTAACTTTATCAAATGGTGAAATCATGTATAAAGAAG
ATATAGTTAGAAGAATTGAATCAATGGATAAAAGATTAACTGATTTAATGTTTACTGTTT
CAACTGCAACTACTTCTACCACAACTAATTCAAACAACAACAACAACAATAACAACAACA
ACACCAATACCACTACCACTACCACTACAACCAATGGTATAACAACAACTTCAACAAATA
ATGGTTCACCATCATGTTCTTCAATTTCTTCAACTTTTCCAACTTCATAATTAAACCAAA
TTAAATAAATAAAATAAACTAAATTTTTAAAAAAAT
Length of connected seq. 806
Full length Seq ID SLD292E
Full length Seq.
>SLD292E.Seq
ATTTCAAGAATGAGTCAATCATGGTCAATTGTAATCTATCGGAGATGTATGTGAAATATA
ATGGCATTAAAATGAGACCAAGGGATATTTTCATACAATCGTTCACGAGAATACCTCCAT
TCTTGTTGTTGCAAACCATTGATAACCCATTCCACTATTTAAATGATGTTATGGCAATTG
AAATCGATTATTCAAAAAGACAACCTACAATTGACAAATTTTTAAATCTCATCGATATTA
ATCCAAATAATGCCAATCATTATTTCACATTAGGTTATTATTTAGCCACAAAAGAAACTA
TTCATTTATTAAATGGTTTTCAAATGTGTAAAATATCACTATTCGTTAAAGCAATTGAAT
TGGATCCAAATCATATTCAATCTTATTTTTCACTTTATCTTTATTTACATTTAACTCGTG
ATCCTGATATAACTTTTGTAACTTTATCAAATGGTGAAATCATGTATAAAGAAGATATAG
TTAGAAGAATTGAATCAATGGATAAAAGATTAACTGATTTAATGTTTACTGTTTCAACTG
CAACTACTTCTACCACAACTAATTCAAACAACAACAACAACAATAACAACAACAACACCA
ATACCACTACCACTACCACTACAACCAATGGTATAACAACAACTTCAACAAATAATGGTT
CACCATCATGTTCTTCAATTTCTTCAACTTTTCCAACTTCATAATTAAACCAAATTAAAT
AAATAAAATAAACTAAATTTTTAAAAAAAT
Length of full length seq. 750