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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD285
Library SL
(Link to library)
Clone ID SLD285
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1
Original site URL
Representative seq. ID SLD285P
(Link to Original site)
Representative DNA sequence 
>SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/
CGGACGCGTGGGAAAATTACAGACATTTAGCAATAAATATAAAAGTACCAGTACATTTAC
TTACAACCCTATTTAATAGTAGGGATAGTTAATAATATAAATATAAATAACAACAATAAG
AACAATAAAAAAAAAAAAAAAGTAATCAAAAATAAAATTTAATATAAAAACACATACACA
CATATAAAAATTAAATAAATCAAAATGGGTTGTTTTAATTCAAAAGAAGCTGGAGCAGGT
AGACCAAAAACTACTACTCAACAACAACAACAAGCAACACCAGAACCAACTGTTACTACA
GCTXXXXXXXXXXGGTGAAGGTGAAGATATGACAATCAAAATTGCAGATTTTGGTCTTAG
TAAAATATTTGGAACTGGTGAAGCATTGGAAACAAGTTGTGGTACACCAGATTATGTTGC
ACCAGAAGTTTTAACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGT
CATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATT
ATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTC
TGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATAC
TGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGC
TGCTGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGG
TGGTCAATCTTCAAATAATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATC
AAAAAAAAAAAAGTAATAATAAT
sequence update 1999. 2.23
Translated Amino Acid sequence 
grvgklqtfsnkykststftynpi***g*lii*i*ittirtikkkkk*skikfnikthth
i*KLNKSKWVVLIQKKLEQVDQKLLLNNNNKQHQNQLLLQ---

---GEGEDMTIKIADFGLSKIFGTGEALETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVI
TYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTA
KQCLDDLWLSGSDQSIGSAADLHSHFAEKMKKYNDQRRGGQSSNN*i******kkkkksk
kkk***
Translated Amino Acid sequence (All Frames) 
Frame A:
rtrgkitdi*q*i*kyqyiylqpylivgivnnininnnnknnkkkkkviknki*ykntyt
hikik*ikmgcfnskeagagrpktttqqqqqatpeptvtta---

---GEGEDMTIKIADFGLSKIFGTGEALETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVI
TYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTA
KQCLDDLWLSGSDQSIGSAADLHSHFAEKMKKYNDQRRGGQSSNN*i******kkkkksk
kkk***

Frame B:
grvgklqtfsnkykststftynpi***g*lii*i*ittirtikkkkk*skikfnikthth
i*KLNKSKWVVLIQKKLEQVDQKLLLNNNNKQHQNQLLLQ---

---vkvki*qsklqilvlvkylelvkhwkqvvvhqimlhqkf*lvvhmimqsicgqlvsl
pifyyvvshhsmlhlktyylkkf*plimisqnqnglmslnmpklslet*lskiqinvilp
nnvlmtfgslvvinqlvlllistlislkr*rnimtkeevvnlqiikfnnnnnkkkkknqk
kksnnn

Frame C:
dawenyrhlainikvpvhllttlfnsrds**ykyk*qq*eq*kkkksnqk*nli*khiht
ykn*inqnglf*fkrswsr*tknyysttttsntrtncyys---

---*r*rydnqncrfws**niwnw*signklwytrlcctrsfnwwfi**csryvvnwchy
lyfimwfptilcfisklii*knfnr*l*fprtrmdscl*tcqsfh*klncqrsrstsycq
tms**plalw**sinwfcc*splsfr*kdeei**pkkrwsifk*lnliiiiikkkkkikk
kkvii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/                       1164   0.0
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/                       1007   0.0
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/                       1007   0.0
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/                       1007   0.0
SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/                        967   0.0
SSA402 (SSA402Q) /CSM/SS/SSA4-A/SSA402Q.Seq.d/                        959   0.0
VFG381 (VFG381Q) /CSM/VF/VFG3-D/VFG381Q.Seq.d/                        948   0.0
SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/                        944   0.0
SSH378 (SSH378Q) /CSM/SS/SSH3-D/SSH378Q.Seq.d/                        932   0.0
SLI715 (SLI715Q) /CSM/SL/SLI7-A/SLI715Q.Seq.d/                        916   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   948   0.0    3
(AU052419) Dictyostelium discoideum slug cDNA, clone SLD285.      948   0.0    1
(AU034202) Dictyostelium discoideum slug cDNA, clone SLC252.      948   0.0    1
(C91258) Dictyostelium discoideum slug cDNA, clone SSJ513.        948   0.0    1
(C90109) Dictyostelium discoideum slug cDNA, clone SSI101.        948   0.0    1
(C83859) Dictyostelium discoideum slug cDNA, clone SSA402.        946   0.0    1
(C91976) Dictyostelium discoideum slug cDNA, clone SSC643.        940   0.0    1
(C90980) Dictyostelium discoideum slug cDNA, clone SSJ377.        908   0.0    1
(BJ432814) Dictyostelium discoideum cDNA clone:ddv19n19, 3' ...   884   0.0    1
(BJ431323) Dictyostelium discoideum cDNA clone:ddv13b21, 3' ...   866   0.0    2
dna update 2009. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser...   338   1e-91
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...   163   6e-39
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f...   159   1e-37
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m...   154   3e-36
BC110966_1(BC110966|pid:none) Xenopus laevis calcium/calmodulin-...   154   3e-36
AY335686_1(AY335686|pid:none) Synthetic construct Homo sapiens C...   153   6e-36
BC041721_1(BC041721|pid:none) Xenopus laevis calcium/calmodulin-...   153   8e-36
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina...   152   1e-35
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina...   152   1e-35
PDBF(1A06) MOL_ID: 1; MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PRO...   152   1e-35
protein update 2009. 6. 2
PSORT 

 psg: 0.66  gvh: 0.33  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLD285 is cyt
5' end seq. ID SLD285F
5' end seq. 
>SLD285F.Seq
CGGACGCGTGGGAAAATTACAGACATTTAGCAATAAATATAAAAGTACCAGTACATTTAC
TTACAACCCTATTTAATAGTAGGGATAGTTAATAATATAAATATAAATAACAACAATAAG
AACAATAAAAAAAAAAAAAAAGTAATCAAAAATAAAATTTAATATAAAAACACATACACA
CATATAAAAATTAAATAAATCAAAATGGGTTGTTTTAATTCAAAAGAAGCTGGAGCAGGT
AGACCAAAAACTACTACTCAACAACAACAACAAGCAACACCAGAACCAACTGTTACTACA
GCT----------
Length of 5' end seq. 303
3' end seq. ID SLD285Z
3' end seq. 
>SLD285Z.Seq
----------GGTGAAGGTGAAGATATGACAATCAAAATTGCAGATTTTGGTCTTAGTAA
AATATTTGGAACTGGTGAAGCATTGGAAACAAGTTGTGGTACACCAGATTATGTTGCACC
AGAAGTTTTAACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGTCAT
TACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATT
TGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGA
ACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGC
CAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGC
TGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGG
TCAATCTTCAAATAATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATCAAA
AAAAAAAAAGTAATAATAAT
Length of 3' end seq. 550
Connected seq. ID SLD285P
Connected seq. 
>SLD285P.Seq
CGGACGCGTGGGAAAATTACAGACATTTAGCAATAAATATAAAAGTACCAGTACATTTAC
TTACAACCCTATTTAATAGTAGGGATAGTTAATAATATAAATATAAATAACAACAATAAG
AACAATAAAAAAAAAAAAAAAGTAATCAAAAATAAAATTTAATATAAAAACACATACACA
CATATAAAAATTAAATAAATCAAAATGGGTTGTTTTAATTCAAAAGAAGCTGGAGCAGGT
AGACCAAAAACTACTACTCAACAACAACAACAAGCAACACCAGAACCAACTGTTACTACA
GCT----------GGTGAAGGTGAAGATATGACAATCAAAATTGCAGATTTTGGTCTTAG
TAAAATATTTGGAACTGGTGAAGCATTGGAAACAAGTTGTGGTACACCAGATTATGTTGC
ACCAGAAGTTTTAACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGT
CATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATT
ATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTC
TGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATAC
TGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGC
TGCTGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGG
TGGTCAATCTTCAAATAATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATC
AAAAAAAAAAAAGTAATAATAAT
Length of connected seq. 853
Full length Seq ID -
Full length Seq. -
Length of full length seq. -