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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD209
Library SL
(Link to library)
Clone ID SLD209
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID SLD209Z
(Link to Original site)
Representative DNA sequence 
>SLD209 (SLD209Q) /CSM/SL/SLD2-A/SLD209Q.Seq.d/
XXXXXXXXXXACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATCGTA
AAGACTGAACTCTTTGTTCCAATTCTCTACATAATGAATTCAAAAATCTTGACGATGCTT
TTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAA
AGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATG
TAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGGTG
GTAGAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGTACTAATACAATCA
ACTATGGTAATACTATGCCATTATCACAAGGTATCAATTTTAACTAAAATTACCAAAAAA
AAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATTGTTGATATTTGTTCATA
ATTA
sequence update 1998. 6. 9
Translated Amino Acid sequence 
---lc*tnrrch*t*csnrkd*TLCSNSLHNEFKNLDDAFAWNNEVPQGLSSSLFTNNQK
NIFKWLGPTGSDCGIVNVNVATNGAEIGGAFGGEKETGGGRESGSDSWKQYCRRSTNTIN
YGNTMPLSQGINFN*nyqkkktkcnlhninkrillifvhn
Translated Amino Acid sequence (All Frames) 
Frame A:
---lc*tnrrch*t*csnrkd*TLCSNSLHNEFKNLDDAFAWNNEVPQGLSSSLFTNNQK
NIFKWLGPTGSDCGIVNVNVATNGAEIGGAFGGEKETGGGRESGSDSWKQYCRRSTNTIN
YGNTMPLSQGINFN*nyqkkktkcnlhninkrillifvhn


Frame B:
---fveptvvaiehdapivktelfvpilyimnskiltmllpgimkshkvshlpssqtikr
issngldlpdltvv*lt*m*lqtvlklvvplevkkrpevvenlaqtagnsiavvvliqst
mvilchyhkvsiltkitkkkkpnvtyit*ikeyc*ylfii


Frame C:
---llnqpslplnmmlqs*rlnslfqfst**iqks*rcfcle**sptrslifplhkqske
ylqmawtyri*lwys*rkcsykrc*nwwclwr*krdrrw*riwlrqletvlps*y*ynql
w*yyaiitryqf*lklpkkknqm*lt*hk*knivdics*l
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD209 (SLD209Q) /CSM/SL/SLD2-A/SLD209Q.Seq.d/                        868   0.0
SLK708 (SLK708Q) /CSM/SL/SLK7-A/SLK708Q.Seq.d/                        854   0.0
SLI488 (SLI488Q) /CSM/SL/SLI4-D/SLI488Q.Seq.d/                        854   0.0
SLH643 (SLH643Q) /CSM/SL/SLH6-B/SLH643Q.Seq.d/                        854   0.0
SLG820 (SLG820Q) /CSM/SL/SLG8-A/SLG820Q.Seq.d/                        854   0.0
SLC178 (SLC178Q) /CSM/SL/SLC1-D/SLC178Q.Seq.d/                        854   0.0
SLB294 (SLB294Q) /CSM/SL/SLB2-D/SLB294Q.Seq.d/                        854   0.0
SLB182 (SLB182Q) /CSM/SL/SLB1-D/SLB182Q.Seq.d/                        854   0.0
SLA722 (SLA722Q) /CSM/SL/SLA7-A/SLA722Q.Seq.d/                        854   0.0
SLG622 (SLG622Q) /CSM/SL/SLG6-A/SLG622Q.Seq.d/                        852   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052370) Dictyostelium discoideum slug cDNA, clone SLD209.      801   0.0    2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...   630   0.0    3
(AU034467) Dictyostelium discoideum slug cDNA, clone SLC178.      630   0.0    3
(AU033671) Dictyostelium discoideum slug cDNA, clone SLB294.      630   0.0    3
(AU052145) Dictyostelium discoideum slug cDNA, clone SLA115.      630   0.0    3
(AU033573) Dictyostelium discoideum slug cDNA, clone SLB182.      630   0.0    3
(AU039362) Dictyostelium discoideum slug cDNA, clone SLH643.      630   0.0    3
(AU033399) Dictyostelium discoideum slug cDNA, clone SLA722.      630   0.0    3
(AU039952) Dictyostelium discoideum slug cDNA, clone SLG820.      630   0.0    3
(AU053372) Dictyostelium discoideum slug cDNA, clone SLI488.      630   0.0    3
dna update 2009. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   177   3e-55
AY250704_1(AY250704|pid:none) Glycine max aldehyde dehydrogenase...   127   2e-35
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   124   3e-34
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   123   1e-33
EF145268_1(EF145268|pid:none) Populus trichocarpa clone WS01122_...   123   2e-33
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   122   4e-33
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   124   1e-32
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   124   3e-32
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   120   3e-32
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   124   3e-32
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SLD209 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD209Z
3' end seq. 
>SLD209Z.Seq
----------ACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATCGTA
AAGACTGAACTCTTTGTTCCAATTCTCTACATAATGAATTCAAAAATCTTGACGATGCTT
TTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAA
AGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATG
TAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGGTG
GTAGAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGTACTAATACAATCA
ACTATGGTAATACTATGCCATTATCACAAGGTATCAATTTTAACTAAAATTACCAAAAAA
AAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATTGTTGATATTTGTTCATA
ATTA
Length of 3' end seq. 474
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -