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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD204
Library SL
(Link to library)
Clone ID SLD204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16445-1
Original site URL
Representative seq. ID SLD204E
(Link to Original site)
Representative DNA sequence 
>SLD204 (SLD204Q) /CSM/SL/SLD2-A/SLD204Q.Seq.d/
GCCGCTATTATTGCTGCCCGTGGTTTATCATCAGCTGCCTCTGCTGCTTCAGCTGCCATC
GATCACATGAGAGATTGGACCTATGGTACCAATGGTCAATGGACCTCTATGGCCATTTAC
TCTGAAGGTGAATATGGTGCCGATAAAGGTCTCTACTTCTCTTTCCCAGTCATTGTAGAT
AACAAAGGTAAATACGAAATCGTTAAAGGTCTTAAACTTGATCAATTCTCTCAAGAACGT
TTCGATGCTACTCGTAAAGAATTATTATCAGAAATGGATGGTGTTAAAGAATTATTACCA
TAAATTAAATTTTAAAAATAAAAATAATAAATTTTTTTTAAAAAA
sequence update 1998. 6. 9
Translated Amino Acid sequence 
AAIIAARGLSSAASAASAAIDHMRDWTYGTNGQWTSMAIYSEGEYGADKGLYFSFPVIVD
NKGKYEIVKGLKLDQFSQERFDATRKELLSEMDGVKELLP*ikf*k*k**iffkk
Translated Amino Acid sequence (All Frames) 
Frame A:
AAIIAARGLSSAASAASAAIDHMRDWTYGTNGQWTSMAIYSEGEYGADKGLYFSFPVIVD
NKGKYEIVKGLKLDQFSQERFDATRKELLSEMDGVKELLP*ikf*k*k**iffkk


Frame B:
pllllpvvyhqlplllqlpsit*eigpmvpmvngplwpftlkvnmvpikvstslsqsl*i
tkvntkslkvlnlinslknvsmllvknyyqkwmvlknyyhklnfknknnkfflk


Frame C:
ryyccpwfiisclccfschrsherldlwyqwsmdlyghll*r*iwcr*rslllfpshcr*
qr*irnr*rs*t*silsrtfrcys*riiirngwc*riitin*ilkikiinff*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI143 (VSI143Q) /CSM/VS/VSI1-B/VSI143Q.Seq.d/                        591   e-168
VSD532 (VSD532Q) /CSM/VS/VSD5-B/VSD532Q.Seq.d/                        591   e-168
VFI849 (VFI849Q) /CSM/VF/VFI8-C/VFI849Q.Seq.d/                        591   e-168
VFH801 (VFH801Q) /CSM/VF/VFH8-A/VFH801Q.Seq.d/                        591   e-168
VFD443 (VFD443Q) /CSM/VF/VFD4-B/VFD443Q.Seq.d/                        591   e-168
VFC762 (VFC762Q) /CSM/VF/VFC7-C/VFC762Q.Seq.d/                        591   e-168
SLK621 (SLK621Q) /CSM/SL/SLK6-A/SLK621Q.Seq.d/                        591   e-168
SLD454 (SLD454Q) /CSM/SL/SLD4-C/SLD454Q.Seq.d/                        591   e-168
SLD382 (SLD382Q) /CSM/SL/SLD3-D/SLD382Q.Seq.d/                        591   e-168
SLD204 (SLD204Q) /CSM/SL/SLD2-A/SLD204Q.Seq.d/                        591   e-168
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268219) Dictyostelium discoideum vegetative cDNA clone:VS...   593   e-165  1
(AU264190) Dictyostelium discoideum vegetative cDNA clone:VS...   593   e-165  1
(AU052516) Dictyostelium discoideum slug cDNA, clone SLD454.      593   e-165  1
(AU052472) Dictyostelium discoideum slug cDNA, clone SLD382.      593   e-165  1
(AU052366) Dictyostelium discoideum slug cDNA, clone SLD204.      593   e-165  1
(AU034345) Dictyostelium discoideum slug cDNA, clone SLC725.      593   e-165  1
(AU034019) Dictyostelium discoideum slug cDNA, clone SLB812.      593   e-165  1
(C83967) Dictyostelium discoideum slug cDNA, clone SLK621.        593   e-165  1
(BJ434136) Dictyostelium discoideum cDNA clone:ddv16b02, 3' ...   593   e-165  1
(BJ432370) Dictyostelium discoideum cDNA clone:ddv18b14, 3' ...   593   e-165  1
dna update 2009. 3.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54D04) RecName: Full=Probable malate dehydrogenase 2, mitochon...   169   3e-41
(A6SY47) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...    98   1e-19
(Q7VW97) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...    97   2e-19
(Q0ABE6) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...    94   1e-18
(A1K5Q9) RecName: Full=Malate dehydrogenase;          EC=1.1.1.37;     94   1e-18
(Q2L068) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...    93   3e-18
(A9BVK0) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...    93   3e-18
(A1W9K7) RecName: Full=Malate dehydrogenase;          EC=1.1.1.37;     92   6e-18
CP000539_2676(CP000539|pid:none) Acidovorax sp. JS42, complete g...    92   6e-18
CP001392_2230(CP001392|pid:none) Diaphorobacter sp. TPSY, comple...    92   6e-18
protein update 2009. 7. 4
PSORT 

 psg: 0.88  gvh: 0.65  alm: 0.54  top: 0.37  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for SLD204 is exc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLD204E
Full length Seq. 
>SLD204E.Seq
GCCGCTATTATTGCTGCCCGTGGTTTATCATCAGCTGCCTCTGCTGCTTCAGCTGCCATC
GATCACATGAGAGATTGGACCTATGGTACCAATGGTCAATGGACCTCTATGGCCATTTAC
TCTGAAGGTGAATATGGTGCCGATAAAGGTCTCTACTTCTCTTTCCCAGTCATTGTAGAT
AACAAAGGTAAATACGAAATCGTTAAAGGTCTTAAACTTGATCAATTCTCTCAAGAACGT
TTCGATGCTACTCGTAAAGAATTATTATCAGAAATGGATGGTGTTAAAGAATTATTACCA
TAAATTAAATTTTAAAAATAAAAATAATAAATTTTTTTTAAAAAA
Length of full length seq. 345