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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD202
Library SL
(Link to library)
Clone ID SLD202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLD202Z
(Link to Original site)
Representative DNA sequence 
>SLD202 (SLD202Q) /CSM/SL/SLD2-A/SLD202Q.Seq.d/
XXXXXXXXXXGAGAGAAGGTGTCAATGAGATTGGTGATGATATCGCCAATACTGCACATG
ATGTAGGTGATGGTTTCGCCAATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTG
CAGAGGAGGGATATGAACTCATTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATT
AAAGGTTATCCTTAATTAAAATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAA
GAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGAC
AAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTCAACGATATATACCCAAACNTG
GTAACTTTGCACGTAAAAGAGGTGCAAGAAATT
sequence update 1998. 6. 9
Translated Amino Acid sequence 
---regvneigddiantahdvgdgfantarevgdgiritaeegyelikdgaeetwvkky*
RLSLIKIKKAQQRMAEQEERRRLMQEESERRRLQRNRERQEPIRTYTTAQEAQRYIPKXG
NFARKRGARN
Translated Amino Acid sequence (All Frames) 
Frame A:
---regvneigddiantahdvgdgfantarevgdgiritaeegyelikdgaeetwvkky*
RLSLIKIKKAQQRMAEQEERRRLMQEESERRRLQRNRERQEPIRTYTTAQEAQRYIPKXG
NFARKRGARN


Frame B:
---ekvsmrlvmispilhmm*vmvspilhvk*vmeleslqrrdmnslkmelkklg*rnik
gyp*lklkkhnkewlnkkkeeg*ckkkvkeddcketekdksqleliqlhkklndiypnxv
tlhvkevqei


Frame C:
---rrcq*dw**yrqyct*cr*wfrqyct*sr*wn*nhcrggi*th*rws*rnlgeeilk
viln*n*ksttkng*trrkkkvdarrk*kktiakkqrktran*nlynctrsstiytqtw*
lct*krckk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF267 (SSF267Q) /CSM/SS/SSF2-C/SSF267Q.Seq.d/                        426   e-118
SLI611 (SLI611Q) /CSM/SL/SLI6-A/SLI611Q.Seq.d/                        426   e-118
SLI292 (SLI292Q) /CSM/SL/SLI2-D/SLI292Q.Seq.d/                        426   e-118
SLI156 (SLI156Q) /CSM/SL/SLI1-C/SLI156Q.Seq.d/                        426   e-118
SLH373 (SLH373Q) /CSM/SL/SLH3-D/SLH373Q.Seq.d/                        426   e-118
SLG377 (SLG377Q) /CSM/SL/SLG3-D/SLG377Q.Seq.d/                        426   e-118
SLE759 (SLE759Q) /CSM/SL/SLE7-C/SLE759Q.Seq.d/                        426   e-118
SLE562 (SLE562Q) /CSM/SL/SLE5-C/SLE562Q.Seq.d/                        426   e-118
SLE376 (SLE376Q) /CSM/SL/SLE3-D/SLE376Q.Seq.d/                        426   e-118
SLD469 (SLD469Q) /CSM/SL/SLD4-C/SLD469Q.Seq.d/                        426   e-118
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052364) Dictyostelium discoideum slug cDNA, clone SLD202.      381   e-145  2
(AU033382) Dictyostelium discoideum slug cDNA, clone SLA703.      381   e-145  2
(AU053416) Dictyostelium discoideum slug cDNA, clone SLI611.      381   e-145  2
(AU052435) Dictyostelium discoideum slug cDNA, clone SLD314.      381   e-145  2
(AU052525) Dictyostelium discoideum slug cDNA, clone SLD469.      381   e-145  2
(AU053271) Dictyostelium discoideum slug cDNA, clone SLI292.      381   e-145  2
(AU052444) Dictyostelium discoideum slug cDNA, clone SLD327.      381   e-145  2
(AU052409) Dictyostelium discoideum slug cDNA, clone SLD271.      381   e-145  2
(AU039769) Dictyostelium discoideum slug cDNA, clone SLG377.      381   e-145  2
(AU053213) Dictyostelium discoideum slug cDNA, clone SLI156.      381   e-145  2
dna update 2009. 3.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromoso...    58   1e-07
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup...    35   0.61
CU207366_266(CU207366|pid:none) Gramella forsetii KT0803 complet...    34   1.8
DQ491001_615(DQ491001|pid:none) Paramecium bursaria chlorella vi...    32   6.8
CP000790_1778(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch...    32   6.8
protein update 2009. 1.22
PSORT 

 psg: 0.48  gvh: 0.16  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.03
 nuc: 0.31  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SLD202 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD202Z
3' end seq. 
>SLD202Z.Seq
----------GAGAGAAGGTGTCAATGAGATTGGTGATGATATCGCCAATACTGCACATG
ATGTAGGTGATGGTTTCGCCAATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTG
CAGAGGAGGGATATGAACTCATTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATT
AAAGGTTATCCTTAATTAAAATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAA
GAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGAC
AAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTCAACGATATATACCCAAACNTG
GTAACTTTGCACGTAAAAGAGGTGCAAGAAATT
Length of 3' end seq. 383
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -