SLD194
Library SL
(Link to library)
Clone ID SLD194
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLD194E
(Link to Original site)
Representative DNA sequence
>SLD194 (SLD194Q) /CSM/SL/SLD1-D/SLD194Q.Seq.d/
CGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAA
GAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGC
ATTTTATAATAATTTT
sequence update 1998. 6. 8
Translated Amino Acid sequence
SPSVSSNQPSRKPQVKPVIRKVLLPHQKRNK*iiflnk*hfiii


Translated Amino Acid sequence (All Frames)
Frame A:
rrrrchqinrqespr*sr**ercccpikkeink*yflinsil**f


Frame B:
vavgvikstvkkapgkagdkkgaaapskkk*innis**iafynnf


Frame C:
SPSVSSNQPSRKPQVKPVIRKVLLPHQKRNK*iiflnk*hfiii


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/ 270 5e-72
SLK705 (SLK705Q) /CSM/SL/SLK7-A/SLK705Q.Seq.d/ 270 5e-72
SLK554 (SLK554Q) /CSM/SL/SLK5-C/SLK554Q.Seq.d/ 270 5e-72
SLK466 (SLK466Q) /CSM/SL/SLK4-C/SLK466Q.Seq.d/ 270 5e-72
SLK447 (SLK447Q) /CSM/SL/SLK4-B/SLK447Q.Seq.d/ 270 5e-72
SLJ877 (SLJ877Q) /CSM/SL/SLJ8-D/SLJ877Q.Seq.d/ 270 5e-72
SLJ768 (SLJ768Q) /CSM/SL/SLJ7-C/SLJ768Q.Seq.d/ 270 5e-72
SLJ355 (SLJ355Q) /CSM/SL/SLJ3-C/SLJ355Q.Seq.d/ 270 5e-72
SLJ280 (SLJ280Q) /CSM/SL/SLJ2-D/SLJ280Q.Seq.d/ 270 5e-72
SLJ258 (SLJ258Q) /CSM/SL/SLJ2-C/SLJ258Q.Seq.d/ 270 5e-72

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(X55973) D. discoideum EF1-I gene for elongation factor 1 al... 161 7e-36 1
(AU285051) Dictyostelium discoideum gamete cDNA clone:FCL-AC... 161 7e-36 1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 161 7e-36 1
(AU285015) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 161 7e-36 1
(AU284890) Dictyostelium discoideum gamete cDNA clone:FC-BO1... 161 7e-36 1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1... 161 7e-36 1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2... 161 7e-36 1
(AU284396) Dictyostelium discoideum gamete cDNA clone:FC-AR2... 161 7e-36 1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0... 161 7e-36 1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2... 161 7e-36 1
dna update 2009. 3.12
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 180,791,789
protein update 2009. 7. 4
PSORT

psg: 0.61 gvh: 0.07 alm: 0.66 top: 0.53 tms: 0.00 mit: 0.52 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
24.0 %: mitochondrial
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for SLD194 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLD194E
Full length Seq.
>SLD194E.Seq
CGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAA
GAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGC
ATTTTATAATAATTTT
Length of full length seq. 136