>SLD176 (SLD176Q) /CSM/SL/SLD1-D/SLD176Q.Seq.d/
XXXXXXXXXXTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGC
TAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGGCAACGGCGCACGTAA
TTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATTGGTGATGATAT
CGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGTGAAGTAGGTGA
TGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGATGGAGCTGAAGAAAC
TTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAAAGCACAACAAAGAAT
GGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCA
AAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTCAACG
ATATATACCCAAACCTGGTAACTTTGCACGTAAAAGAGGTGCAAGAAATTAAAAAAAGAA
AAAATAAAAATAATTAAAAGAAAT

---MRNGAQRAGNGARNYANEGYNSVRDGAQRAGNGARNYAQQGYQAWREGVNEIGDDIA
NTAHDVGDGFANTAREVGDGIRITAEEGYELIKDGAEETWVKKY*rlslikikkaqqrma
eqeerrrlmqeeserrrlqrnrerqepirtyttaqeaqryipkpgnfarkrgarn*kkkk
*k*lke

Frame A:
---p*emvhkelatahvimlmkvtip*emvhkelatahvimlnkvikhgekvsmrlvmis
pilhmm*vmvspilhvk*vmeleslqrrdmnslkmelkklg*rnikgyp*lklkkhnkew
lnkkkeeg*ckkkvkeddcketekdksqleliqlhkklndiypnlvtlhvkevqeikkrk
nknn*kk


Frame B:
---hekwctkswqrrt*lc**rlqfrerwctkswqrrt*lcstrlssmerrcq*dw**yr
qyct*cr*wfrqyct*sr*wn*nhcrggi*th*rws*rnlgeeilkviln*n*ksttkng
*trrkkkvdarrk*kktiakkqrktran*nlynctrsstiytqtw*lct*krckklkkek
ikiikrn


Frame C:
---MRNGAQRAGNGARNYANEGYNSVRDGAQRAGNGARNYAQQGYQAWREGVNEIGDDIA
NTAHDVGDGFANTAREVGDGIRITAEEGYELIKDGAEETWVKKY*rlslikikkaqqrma
eqeerrrlmqeeserrrlqrnrerqepirtyttaqeaqryipkpgnfarkrgarn*kkkk
*k*lke

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF267 (SSF267Q) /CSM/SS/SSF2-C/SSF267Q.Seq.d/                        678   0.0
SLH373 (SLH373Q) /CSM/SL/SLH3-D/SLH373Q.Seq.d/                        678   0.0
SLE562 (SLE562Q) /CSM/SL/SLE5-C/SLE562Q.Seq.d/                        678   0.0
SLE376 (SLE376Q) /CSM/SL/SLE3-D/SLE376Q.Seq.d/                        678   0.0
SLD404 (SLD404Q) /CSM/SL/SLD4-A/SLD404Q.Seq.d/                        678   0.0
SLD176 (SLD176Q) /CSM/SL/SLD1-D/SLD176Q.Seq.d/                        678   0.0
SLB705 (SLB705Q) /CSM/SL/SLB7-A/SLB705Q.Seq.d/                        678   0.0
SLB691 (SLB691Q) /CSM/SL/SLB6-D/SLB691Q.Seq.d/                        678   0.0
SFL412 (SFL412Q) /CSM/SF/SFL4-A/SFL412Q.Seq.d/                        678   0.0
SFL221 (SFL221Q) /CSM/SF/SFL2-A/SFL221Q.Seq.d/                        678   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052348) Dictyostelium discoideum slug cDNA, clone SLD176.      654   0.0    2
(BJ377545) Dictyostelium discoideum cDNA clone:ddc24b03, 3' ...   654   0.0    2
(AU052481) Dictyostelium discoideum slug cDNA, clone SLD404.      654   0.0    2
(AU033991) Dictyostelium discoideum slug cDNA, clone SLB705.      654   0.0    2
(BJ342984) Dictyostelium discoideum cDNA clone:dda15o13, 3' ...   654   0.0    2
(BJ340452) Dictyostelium discoideum cDNA clone:dda2m03, 3' e...   654   0.0    2
(BJ372200) Dictyostelium discoideum cDNA clone:ddc11l13, 3' ...   654   0.0    2
(BJ400270) Dictyostelium discoideum cDNA clone:dds9d14, 3' e...   654   0.0    2
(BJ399788) Dictyostelium discoideum cDNA clone:dds7b13, 3' e...   654   0.0    2
(BJ342430) Dictyostelium discoideum cDNA clone:dda13o23, 3' ...   654   0.0    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromoso...    61   2e-08
AJ628940_1(AJ628940|pid:none) Pisum sativum mRNA for late embryo...    49   9e-05
AC146855_28(AC146855|pid:none) Medicago truncatula clone mth2-16...    45   0.002
Z69360_4(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    44   0.004
T21369(T21369)hypothetical protein F25H8.5a - Caenorhabditis ele...    44   0.004
Z69360_3(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    44   0.004
AL844509_662(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.004
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup...    43   0.005
AE017180_1660(AE017180|pid:none) Geobacter sulfurreducens PCA, c...    41   0.019
EU780020_1(EU780020|pid:none) Fucus serratus isolate Fse_00017 h...    40   0.041

 psg: 0.57  gvh: 0.17  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SLD176 is nuc

>SLD176Z.Seq
----------TCCATGAGAAATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGC
TAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGGCAACGGCGCACGTAA
TTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATTGGTGATGATAT
CGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGTGAAGTAGGTGA
TGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGATGGAGCTGAAGAAAC
TTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAAAGCACAACAAAGAAT
GGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCA
AAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTCAACG
ATATATACCCAAACCTGGTAACTTTGCACGTAAAAGAGGTGCAAGAAATTAAAAAAAGAA
AAAATAAAAATAATTAAAAGAAAT