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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD164
Library SL
(Link to library)
Clone ID SLD164
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16478-1
Original site URL
Representative seq. ID SLD164Z
(Link to Original site)
Representative DNA sequence 
>SLD164 (SLD164Q) /CSM/SL/SLD1-C/SLD164Q.Seq.d/
XXXXXXXXXXGAATCCGAAGCAAGTGGTGACTTTAAGAAATTATTAGAGAAACTCACTGA
ACCAAGAGATGAATCACCAGTCATCAACCCAATGCAAGTTTCAAAAGATGCTGAAGATCT
CTACAAAGCTGGTGAAGGTAAAATTGGTACCGACGAAAAGGAATTCATCAAAATTCTCAC
CTCTCGTTCATTACCACATATTGCTGCCGTCGCTAGTGAATACATTAAACATCACAAAAA
ACACTCACTCATCAAAGCAATCGATTCTGAATTCTCTGGTTCAATTAAAACTGGTTTAAT
CGCTATCGTTACCTATGCTCTCAACCCATATGGTTATTTCGCTGAAATCTTAAACAAATC
AATGAAAGGTGCTGGTACAAATGATAACAAACTCATTCGTACTGTTGTAACTCAAATGCA
CAATATGCCACAAATTAAAACTGCTTATTCAACTCTCTTCAAGAATTCATTAGCTCATGA
TATTCAAGCTGATTGTAGTGGTGATTTCAAAAAATTATTATTAGATATTATCTCATAAAA
TAATAATTTTCCAT
sequence update 1998. 6. 8
Translated Amino Acid sequence 
---SEASGDFKKLLEKLTEPRDESPVINPMQVSKDAEDLYKAGEGKIGTDEKEFIKILTS
RSLPHIAAVASEYIKHHKKHSLIKAIDSEFSGSIKTGLIAIVTYALNPYGYFAEILNKSM
KGAGTNDNKLIRTVVTQMHNMPQIKTAYSTLFKNSLAHDIQADCSGDFKKLLLDIIS*nn
nfp
Translated Amino Acid sequence (All Frames) 
Frame A:
---npkqvvtlrny*rnslnqemnhqsstqckfqkmlkistklvkvklvptkrnsskfsp
lvhyhillpslvntlnitknthsskqsilnslvqlklv*slslpmlsthmvislks*tnq
*kvlvqmitnsfvll*lkctichklklliqlssrih*lmifklivvvisknyy*ilshki
iifh


Frame B:
---irskw*l*eiireth*tkr*itshqpnasfkrc*rslqsw*r*nwyrrkgihqnshl
sfittyccrr**ih*tsqktlthqsnrf*ilwfn*nwfnryrylcsqpiwlfr*nlkqin
ercwyk**qthsyccnsnaqyatn*nclfnslqefiss*yss*l*w*fqkiiiryylik*
*fs


Frame C:
---SEASGDFKKLLEKLTEPRDESPVINPMQVSKDAEDLYKAGEGKIGTDEKEFIKILTS
RSLPHIAAVASEYIKHHKKHSLIKAIDSEFSGSIKTGLIAIVTYALNPYGYFAEILNKSM
KGAGTNDNKLIRTVVTQMHNMPQIKTAYSTLFKNSLAHDIQADCSGDFKKLLLDIIS*nn
nfp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH871 (SLH871Q) /CSM/SL/SLH8-C/SLH871Q.Seq.d/                       1078   0.0
SLH384 (SLH384Q) /CSM/SL/SLH3-D/SLH384Q.Seq.d/                       1078   0.0
SLH343 (SLH343Q) /CSM/SL/SLH3-B/SLH343Q.Seq.d/                       1078   0.0
SLG704 (SLG704Q) /CSM/SL/SLG7-A/SLG704Q.Seq.d/                       1078   0.0
SLD403 (SLD403Q) /CSM/SL/SLD4-A/SLD403Q.Seq.d/                       1078   0.0
SLD164 (SLD164Q) /CSM/SL/SLD1-C/SLD164Q.Seq.d/                       1078   0.0
SLC202 (SLC202Q) /CSM/SL/SLC2-A/SLC202Q.Seq.d/                       1078   0.0
SLB534 (SLB534Q) /CSM/SL/SLB5-B/SLB534Q.Seq.d/                       1078   0.0
SLA785 (SLA785Q) /CSM/SL/SLA7-D/SLA785Q.Seq.d/                       1078   0.0
SLA119 (SLA119Q) /CSM/SL/SLA1-A/SLA119Q.Seq.d/                       1078   0.0
own update 2002. 7. 5
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052480) Dictyostelium discoideum slug cDNA, clone SLD403.     1076   0.0    1
(AU052338) Dictyostelium discoideum slug cDNA, clone SLD164.     1076   0.0    1
(AU052148) Dictyostelium discoideum slug cDNA, clone SLA119.     1076   0.0    1
(AU039987) Dictyostelium discoideum slug cDNA, clone SLH384.     1076   0.0    1
(AU039900) Dictyostelium discoideum slug cDNA, clone SLG704.     1076   0.0    1
(AU039522) Dictyostelium discoideum slug cDNA, clone SLA785.     1076   0.0    1
(AU039484) Dictyostelium discoideum slug cDNA, clone SLH871.     1076   0.0    1
(AU039282) Dictyostelium discoideum slug cDNA, clone SLH343.     1076   0.0    1
(AU034480) Dictyostelium discoideum slug cDNA, clone SLC202.     1076   0.0    1
(AU033862) Dictyostelium discoideum slug cDNA, clone SLB534.     1076   0.0    1
dna update 2009. 3.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P24639) RecName: Full=Annexin A7; AltName: Full=Annexin-7; AltN...   345   3e-94
M69022_1(M69022|pid:none) D.discoideum annexin VII (synexin) mRN...   345   3e-94
AK061821_1(AK061821|pid:none) Oryza sativa Japonica Group cDNA c...   143   3e-33
BC068035_1(BC068035|pid:none) Xenopus tropicalis annexin A7, mRN...   140   2e-32
FB831460_1(FB831460|pid:none) Sequence 50733 from Patent WO20080...   138   1e-31
FB831434_1(FB831434|pid:none) Sequence 50707 from Patent WO20080...   135   5e-31
(P26256) RecName: Full=Annexin-B12; AltName: Full=Annexin-12; Al...   135   7e-31
BC070896_1(BC070896|pid:none) Rattus norvegicus annexin A7, mRNA...   134   2e-30
AF280423_1(AF280423|pid:none) Rattus norvegicus annexin VII mRNA...   134   2e-30
AK059408_1(AK059408|pid:none) Oryza sativa Japonica Group cDNA c...   133   3e-30
protein update 2009. 6. 2
PSORT 

 psg: 0.59  gvh: 0.26  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLD164 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD164Z
3' end seq. 
>SLD164Z.Seq
----------GAATCCGAAGCAAGTGGTGACTTTAAGAAATTATTAGAGAAACTCACTGA
ACCAAGAGATGAATCACCAGTCATCAACCCAATGCAAGTTTCAAAAGATGCTGAAGATCT
CTACAAAGCTGGTGAAGGTAAAATTGGTACCGACGAAAAGGAATTCATCAAAATTCTCAC
CTCTCGTTCATTACCACATATTGCTGCCGTCGCTAGTGAATACATTAAACATCACAAAAA
ACACTCACTCATCAAAGCAATCGATTCTGAATTCTCTGGTTCAATTAAAACTGGTTTAAT
CGCTATCGTTACCTATGCTCTCAACCCATATGGTTATTTCGCTGAAATCTTAAACAAATC
AATGAAAGGTGCTGGTACAAATGATAACAAACTCATTCGTACTGTTGTAACTCAAATGCA
CAATATGCCACAAATTAAAACTGCTTATTCAACTCTCTTCAAGAATTCATTAGCTCATGA
TATTCAAGCTGATTGTAGTGGTGATTTCAAAAAATTATTATTAGATATTATCTCATAAAA
TAATAATTTTCCAT
Length of 3' end seq. 544
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -