NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD152
Library SL
(Link to library)
Clone ID SLD152
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLD152E
(Link to Original site)
Representative DNA sequence 
>SLD152 (SLD152Q) /CSM/SL/SLD1-C/SLD152Q.Seq.d/
AAAATGTCCACAAATAAAGTAAACAAAGAAAGAACTTTCCTTGCTGTTAAACCAGACGGT
GTTGCTCGTGGTTTAGTTGGTGAAATCATCGCCAGATACGAAAAGAAAGGTTTCGTTTTA
GTTGGTTTAAAACAATTAGTTCCAACCAAAGACTTAGCTGAATCTCACTATGCTGAACAC
AAAGAAAGACCATTCTTCGGTGGTTTAGTCTCATTCATTACCTCTGGTCCAGTCGTTGCT
ATGGTCTTCGAAGGTAAAGGTGTTGTTGCCTCTGCCCGTTTAATGATCGGTGTTACCAAC
CCATTAGCCTCAGCCCCAGGTTCAATTCGTGGTGATTTCGGTGTTGATGTTGGTAGAAAC
ATCATCCACGGTTCTGATTCAGTTGAATCTGCCAACAGAGAAATTGCTTTATGGTTCAAA
CCAGAAGAATTATTAACTGAAGTTAAACCAAACCCAAATTTATACGAATAAATAATTTAG
CTAAATTCTAAATCATTTAATGTAAA
sequence update 1998. 6. 8
Translated Amino Acid sequence 
KMSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEH
KERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRN
IIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE*ii*lnsksfnv
Translated Amino Acid sequence (All Frames) 
Frame A:
KMSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEH
KERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRN
IIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE*ii*lnsksfnv


Frame B:
kcpqik*tkkelslllnqtvllvv*lvksspdtkrkvsf*lv*nn*fqpkt*lnltmlnt
kkdhssvv*shslplvqsllwsskvkvllplpv**svlpth*pqpqvqfvvisvlmlvet
sstvliqlnlptekllygsnqkny*lklnqtqiytnk*fs*ilnhlm*


Frame C:
nvhk*skqrknfpcc*trrccswfsw*nhrqirkerfrfswfktissnqrls*islc*tq
rktilrwfslihylwssrcyglrr*rccclcpfndrcyqpislsprfnsw*frc*cw*kh
hprf*fs*icqqrncfmvqtrriin*s*tkpkfirinnlakf*ii*ck
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN707 (VHN707Q) /CSM/VH/VHN7-A/VHN707Q.Seq.d/                       1003   0.0
VHK695 (VHK695Q) /CSM/VH/VHK6-D/VHK695Q.Seq.d/                       1003   0.0
SLE365 (SLE365Q) /CSM/SL/SLE3-C/SLE365Q.Seq.d/                       1003   0.0
SLD152 (SLD152Q) /CSM/SL/SLD1-C/SLD152Q.Seq.d/                       1003   0.0
VSJ480 (VSJ480Q) /CSM/VS/VSJ4-D/VSJ480Q.Seq.d/                        997   0.0
VHB850 (VHB850Q) /CSM/VH/VHB8-C/VHB850Q.Seq.d/                        991   0.0
AFN515 (AFN515Q) /CSM/AF/AFN5-A/AFN515Q.Seq.d/                        989   0.0
VHC612 (VHC612Q) /CSM/VH/VHC6-A/VHC612Q.Seq.d/                        987   0.0
SLG669 (SLG669Q) /CSM/SL/SLG6-C/SLG669Q.Seq.d/                        971   0.0
VHJ421 (VHJ421Q) /CSM/VH/VHJ4-A/VHJ421Q.Seq.d/                        959   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(A32505) D.discoideum NDP kinase gene.                           1003   0.0    1
(AU052328) Dictyostelium discoideum slug cDNA, clone SLD152.     1003   0.0    1
(AU034935) Dictyostelium discoideum slug cDNA, clone SLE365.     1003   0.0    1
(BJ426185) Dictyostelium discoideum cDNA clone:ddv58n01, 5' ...  1003   0.0    1
(BJ424587) Dictyostelium discoideum cDNA clone:ddv52m24, 5' ...  1003   0.0    1
(J05457) D.discoideum nucleoside diphosphate kinase Gip17 mR...   997   0.0    1
(AU269986) Dictyostelium discoideum vegetative cDNA clone:VS...   997   0.0    1
(BJ443439) Dictyostelium discoideum cDNA clone:ddv52m24, 3' ...   991   0.0    1
(BJ437520) Dictyostelium discoideum cDNA clone:ddv34d14, 3' ...   991   0.0    1
(BJ419427) Dictyostelium discoideum cDNA clone:ddv36g04, 5' ...   987   0.0    1
dna update 2009. 3.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P22887) RecName: Full=Nucleoside diphosphate kinase, cytosolic;...   308   5e-83
NRL(1NDC) Nucleoside diphosphate kinase (EC 2.7.4.6) complexed W...   298   4e-80
NRL(1NDK) Nucleoside diphosphate kinase (EC 2.7.4.6) mutant with...   290   1e-77
(B0C4I0) RecName: Full=Nucleoside diphosphate kinase;          S...   219   4e-56
(P50590) RecName: Full=Nucleoside diphosphate kinase;          S...   209   4e-53
(Q7NMQ5) RecName: Full=Nucleoside diphosphate kinase;          S...   208   5e-53
CT978603_2377(CT978603|pid:none) Synechococcus sp. RCC307 genomi...   204   7e-52
CP001037_5754(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...   204   1e-51
(Q0I6J3) RecName: Full=Nucleoside diphosphate kinase;          S...   201   8e-51
(Q3AVV5) RecName: Full=Nucleoside diphosphate kinase;          S...   200   2e-50
protein update 2009. 7. 4
PSORT 

 psg: 0.69  gvh: 0.48  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial

>> prediction for SLD152 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLD152E
Full length Seq. 
>SLD152E.Seq
AAAATGTCCACAAATAAAGTAAACAAAGAAAGAACTTTCCTTGCTGTTAAACCAGACGGT
GTTGCTCGTGGTTTAGTTGGTGAAATCATCGCCAGATACGAAAAGAAAGGTTTCGTTTTA
GTTGGTTTAAAACAATTAGTTCCAACCAAAGACTTAGCTGAATCTCACTATGCTGAACAC
AAAGAAAGACCATTCTTCGGTGGTTTAGTCTCATTCATTACCTCTGGTCCAGTCGTTGCT
ATGGTCTTCGAAGGTAAAGGTGTTGTTGCCTCTGCCCGTTTAATGATCGGTGTTACCAAC
CCATTAGCCTCAGCCCCAGGTTCAATTCGTGGTGATTTCGGTGTTGATGTTGGTAGAAAC
ATCATCCACGGTTCTGATTCAGTTGAATCTGCCAACAGAGAAATTGCTTTATGGTTCAAA
CCAGAAGAATTATTAACTGAAGTTAAACCAAACCCAAATTTATACGAATAAATAATTTAG
CTAAATTCTAAATCATTTAATGTAAA
Length of full length seq. 506