SLD147
Library SL
(Link to library)
Clone ID SLD147
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01343-1
Original site URL
Representative seq. ID SLD147P
(Link to Original site)
Representative DNA sequence
>SLD147 (SLD147Q) /CSM/SL/SLD1-B/SLD147Q.Seq.d/
AATAGTTTATATTCATCATCAGCACCAACCAATTCAGGTATGGCCAATTATAAACCAATT
TCACCAAATTCTAGTATAATCTCACCAAGTAAACCTGAACCATTGGTTTTACCATCTTCA
ATTTCAACAACCACTACACCAACAAATAGTACTXXXXXXXXXXGTATAATCTCACCAAGT
AAACCTGAACCATTGGTTTTACCATCTTCAATTTCAACAACCACTACACCAACAAATAGT
ACTCCAAATACACCATCAACTCAGCAACAACAACAACAACAATCATCACCAAATAATACA
AATGAAAATAAACAAAAAAGAAATTCATTAGGTGAACAAACTTCAATAACATTAGAAAAA
ATGGCACAAGAATCATCATTAACCATCAATGAAAAGGATGAAGAGGAAACAAACGATAGT
AGTGGTAAAAAATCCAAATCTAAACCAAAATTATTCCCACATCAATGGTCAATGGGTAAA
CCATCGGAAAAAGATGCTAAAAAGGAGGAGAAAGAACGTAAAGAAAATGAAAAACGTGAA
GAGAAAGAACGTAAAGAGTTGGAAAAACGTGAGAAAAAAGAACGTAAAGAAAAGGAGAAA
TTAGATAAAAAAGGTGAAAAAGGTGAC
sequence update 1999. 2.23
Translated Amino Acid sequence
NSLYSSSAPTNSGMANYKPISPNSSIISPSKPEPLVLPSSISTTTTPTNST---

---IISPSKPEPLVLPSSISTTTTPTNSTPNTPSTQQQQQQQSSPNNTNENKQKRNSLGE
QTSITLEKMAQESSLTINEKDEEETNDSSGKKSKSKPKLFPHQWSMGKPSEKDAKKEEKE
RKENEKREEKERKELEKREKKERKEKEKLDKKGEKGD


Translated Amino Acid sequence (All Frames)
Frame A:
NSLYSSSAPTNSGMANYKPISPNSSIISPSKPEPLVLPSSISTTTTPTNST---

---v*shqvnlnhwfyhlqfqqplhqqivlqihhqlsnnnnnnhhqiiqmkinkkeih*v
nklq*h*kkwhknhh*psmkrmkrkqtivvvknpnlnqnyshingqwvnhrkkmlkrrrk
nvkkmknvkrknvkswknvrkknvkkrrn*ikkvkkv

Frame B:
ivyihhqhqpiqvwpiinqfhqilv*shqvnlnhwfyhlqfqqplhqqiv---

---ynltk*t*tigftifnfnnhytnk*yskytinsatttttiitk*yk*k*tkkkfir*
tnfnnirkngtriiinhq*kg*rgnkr**w*kiqi*tkiiptsmvng*tigkrc*kgger
t*rk*kt*rert*rvgkt*ekrt*rkgeir*kr*kr*

Frame C:
*fifiistnqfrygql*tnftkf*ynltk*t*tigftifnfnnhytnk*y---

---IISPSKPEPLVLPSSISTTTTPTNSTPNTPSTQQQQQQQSSPNNTNENKQKRNSLGE
QTSITLEKMAQESSLTINEKDEEETNDSSGKKSKSKPKLFPHQWSMGKPSEKDAKKEEKE
RKENEKREEKERKELEKREKKERKEKEKLDKKGEKGD

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLD147 (SLD147Q) /CSM/SL/SLD1-B/SLD147Q.Seq.d/ 448 e-125
SLG706 (SLG706Q) /CSM/SL/SLG7-A/SLG706Q.Seq.d/ 74 3e-12
SLJ788 (SLJ788Q) /CSM/SL/SLJ7-D/SLJ788Q.Seq.d/ 48 2e-04
VFJ759 (VFJ759Q) /CSM/VF/VFJ7-C/VFJ759Q.Seq.d/ 38 0.16
FC-AE01 (FC-AE01Q) /CSM/FC/FC-AE/FC-AE01Q.Seq.d/ 38 0.16
AHO644 (AHO644Q) /CSM/AH/AHO6-B/AHO644Q.Seq.d/ 38 0.16
AHE803 (AHE803Q) /CSM/AH/AHE8-A/AHE803Q.Seq.d/ 38 0.16
VFL282 (VFL282Q) /CSM/VF/VFL2-D/VFL282Q.Seq.d/ 36 0.62
SHG768 (SHG768Q) /CSM/SH/SHG7-C/SHG768Q.Seq.d/ 36 0.62
SHG140 (SHG140Q) /CSM/SH/SHG1-B/SHG140Q.Seq.d/ 36 0.62

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052325) Dictyostelium discoideum slug cDNA, clone SLD147. 246 e-101 2
(AU061093) Dictyostelium discoideum slug cDNA, clone SLD147. 303 4e-78 1
(AU039902) Dictyostelium discoideum slug cDNA, clone SLG706. 76 2e-09 1
(AL445674) Human DNA sequence from clone RP11-477L5 on chrom... 46 1.6 1
(AC203125) Eulemur macaco macaco clone CH273-467O20, WORKING... 46 1.6 1
(BG726900) sae28e02.y1 Gm-c1067 Glycine max cDNA clone GENOM... 46 1.6 1
(ET279808) S0007M21_SP6 CHORI-214 Salmo salar genomic clone ... 34 2.3 2
(ET394180) S0176C19_SP6 CHORI-214 Salmo salar genomic clone ... 34 2.7 2
(ET267984) S0038I17_T7 CHORI-214 Salmo salar genomic clone S... 34 3.7 2
(AC122329) Mus musculus BAC clone RP23-341A12 from 19, compl... 44 6.2 1
dna update 2009. 3.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P53273) RecName: Full=Uncharacterized vacuolar membrane protein... 39 0.15
CP000764_3477(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 34 2.9
CR382132_1088(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 33 6.5

protein update 2009. 1.22
PSORT

psg: 0.82 gvh: 0.45 alm: 0.53 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.13 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
24.0 %: mitochondrial
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SLD147 is nuc

5' end seq. ID SLD147F
5' end seq.
>SLD147F.Seq
AATAGTTTATATTCATCATCAGCACCAACCAATTCAGGTATGGCCAATTATAAACCAATT
TCACCAAATTCTAGTATAATCTCACCAAGTAAACCTGAACCATTGGTTTTACCATCTTCA
ATTTCAACAACCACTACACCAACAAATAGTACT----------
Length of 5' end seq. 153
3' end seq. ID SLD147Z
3' end seq.
>SLD147Z.Seq
----------GTATAATCTCACCAAGTAAACCTGAACCATTGGTTTTACCATCTTCAATT
TCAACAACCACTACACCAACAAATAGTACTCCAAATACACCATCAACTCAGCAACAACAA
CAACAACAATCATCACCAAATAATACAAATGAAAATAAACAAAAAAGAAATTCATTAGGT
GAACAAACTTCAATAACATTAGAAAAAATGGCACAAGAATCATCATTAACCATCAATGAA
AAGGATGAAGAGGAAACAAACGATAGTAGTGGTAAAAAATCCAAATCTAAACCAAAATTA
TTCCCACATCAATGGTCAATGGGTAAACCATCGGAAAAAGATGCTAAAAAGGAGGAGAAA
GAACGTAAAGAAAATGAAAAACGTGAAGAGAAAGAACGTAAAGAGTTGGAAAAACGTGAG
AAAAAAGAACGTAAAGAAAAGGAGAAATTAGATAAAAAAGGTGAAAAAGGTGAC
Length of 3' end seq. 464
Connected seq. ID SLD147P
Connected seq.
>SLD147P.Seq
AATAGTTTATATTCATCATCAGCACCAACCAATTCAGGTATGGCCAATTATAAACCAATT
TCACCAAATTCTAGTATAATCTCACCAAGTAAACCTGAACCATTGGTTTTACCATCTTCA
ATTTCAACAACCACTACACCAACAAATAGTACT----------GTATAATCTCACCAAGT
AAACCTGAACCATTGGTTTTACCATCTTCAATTTCAACAACCACTACACCAACAAATAGT
ACTCCAAATACACCATCAACTCAGCAACAACAACAACAACAATCATCACCAAATAATACA
AATGAAAATAAACAAAAAAGAAATTCATTAGGTGAACAAACTTCAATAACATTAGAAAAA
ATGGCACAAGAATCATCATTAACCATCAATGAAAAGGATGAAGAGGAAACAAACGATAGT
AGTGGTAAAAAATCCAAATCTAAACCAAAATTATTCCCACATCAATGGTCAATGGGTAAA
CCATCGGAAAAAGATGCTAAAAAGGAGGAGAAAGAACGTAAAGAAAATGAAAAACGTGAA
GAGAAAGAACGTAAAGAGTTGGAAAAACGTGAGAAAAAAGAACGTAAAGAAAAGGAGAAA
TTAGATAAAAAAGGTGAAAAAGGTGAC
Length of connected seq. 617
Full length Seq ID -
Full length Seq. -
Length of full length seq. -