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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD137
Library SL
(Link to library)
Clone ID SLD137
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16379-1
Original site URL
Representative seq. ID SLD137E
(Link to Original site)
Representative DNA sequence 
>SLD137 (SLD137Q) /CSM/SL/SLD1-B/SLD137Q.Seq.d/
AAAAAACACCAACAAACTCATCAAGATAAAAAACAAACACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAAACCCAACCAACAACAACAGCAACAGCAACAAATTCTACCACCCCCTCTACTACT
GAAGATGATAAATCAACTACAACACCAATCACAACTACAATTTTAACAGAAAATAAATCT
GATGATAAAGAAAAAGAAAAGGAAAAAGAAAAAGAAAAAGTTGATGAA
sequence update 1998. 6. 8
Translated Amino Acid sequence 
KKHQQTHQDKKQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQPTTTATATNSTTPSTT
EDDKSTTTPITTTILTENKSDDKEKEKEKEKEKVDE
Translated Amino Acid sequence (All Frames) 
Frame A:
KKHQQTHQDKKQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTQPTTTATATNSTTPSTT
EDDKSTTTPITTTILTENKSDDKEKEKEKEKEKVDE


Frame B:
kntnklikiknkhnnnnnnnnnnnnnnnnnnnnnnnnnnnnkpnqqqqqqqqilppplll
kminqlqhqsqlqf*qkinlmikkkkrkkkkkklm


Frame C:
ktptnssr*ktntttttttttttttttttttttttttttttnptnnnsnsnkfyhplyy*
r**inyntnhnynfnrk*i***rkrkgkrkrks**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD137 (SLD137Q) /CSM/SL/SLD1-B/SLD137Q.Seq.d/                        176   1e-43
AHE890 (AHE890Q) /CSM/AH/AHE8-D/AHE890Q.Seq.d/                        176   1e-43
VHN316 (VHN316Q) /CSM/VH/VHN3-A/VHN316Q.Seq.d/                        147   1e-34
SFI768 (SFI768Q) /CSM/SF/SFI7-C/SFI768Q.Seq.d/                        129   2e-29
VHP876 (VHP876Q) /CSM/VH/VHP8-D/VHP876Q.Seq.d/                        111   6e-24
VHL766 (VHL766Q) /CSM/VH/VHL7-C/VHL766Q.Seq.d/                         86   3e-16
SSM235 (SSM235Q) /CSM/SS/SSM2-B/SSM235Q.Seq.d/                         42   0.004
VHO159 (VHO159Q) /CSM/VH/VHO1-C/VHO159Q.Seq.d/                         40   0.018
VSF851 (VSF851Q) /CSM/VS/VSF8-C/VSF851Q.Seq.d/                         36   0.28
SLF410 (SLF410Q) /CSM/SL/SLF4-A/SLF410Q.Seq.d/                         36   0.28
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052319) Dictyostelium discoideum slug cDNA, clone SLD137.      176   3e-40  1
(BJ350714) Dictyostelium discoideum cDNA clone:dda40d24, 3' ...   176   3e-40  1
(BJ444706) Dictyostelium discoideum cDNA clone:ddv57p03, 3' ...   103   1e-29  2
(BJ402891) Dictyostelium discoideum cDNA clone:dds18h17, 3' ...    98   9e-24  2
(BJ446474) Dictyostelium discoideum cDNA clone:ddv62h20, 3' ...   111   1e-20  1
(BJ443902) Dictyostelium discoideum cDNA clone:ddv54d17, 3' ...    66   1e-17  3
(CU914275) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.68   1
(EJ227074) 1092401422942 Global-Ocean-Sampling_GS-27-01-01-1...    44   2.7    1
dna update 2009. 3.10
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.302    0.112    0.315

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 107,485,376
protein update 2009. 7. 4
PSORT 

 psg: 0.47  gvh: 0.32  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal

>> prediction for SLD137 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLD137E
Full length Seq. 
>SLD137E.Seq
AAAAAACACCAACAAACTCATCAAGATAAAAAACAAACACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAAACCCAACCAACAACAACAGCAACAGCAACAAATTCTACCACCCCCTCTACTACT
GAAGATGATAAATCAACTACAACACCAATCACAACTACAATTTTAACAGAAAATAAATCT
GATGATAAAGAAAAAGAAAAGGAAAAAGAAAAAGAAAAAGTTGATGAA
Length of full length seq. 288