NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD136
Library SL
(Link to library)
Clone ID SLD136
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09353-1
Original site URL
Representative seq. ID SLD136P
(Link to Original site)
Representative DNA sequence 
>SLD136 (SLD136Q) /CSM/SL/SLD1-B/SLD136Q.Seq.d/
CACAAAAAGAGAATAGTTGTACTATATAATTTTTTTTTTTATTTCTCTTTCTTTTTTTTT
TTTTTTTTTCAAATCAATCAATCAATTAAATCACCTGTAATTTTACTAAACAACTATAAT
ATATAAATAGATTTAAAAAAAAAATATATAAAAAATGTCATCAGATATTTCAGAAAAAAT
TCAACAAGCAAGAAGAGATGCTGAATCAATGAAAGAACAAATTAGAGCAAACAGAGATGT
AATGAATGATACTACTCTCAAAACTTTTACTCGTGATTTACXXXXXXXXXXGTCACGAAG
CTGATATTAATGCAGTTCAATATTTCCCAAATGGTTTATCATTTGGTACTGGTTCTGATG
ATGCTTCATGTAGATTATTTGATATTCGTGCCGATCGTGAATTAATGCAATACACCCACG
ACAACATTTTATGTGGTATTACATCCGTTGGTTTTTCATTTTCAGGTCGTTTCTTATTTG
CTGGTTACGATGATTTCACTTGCAACGTTTGGGATACATTAAAGGGTGAACGTGTTCTCT
CTTTAACTGGTCACGGTAATCGTGTATCTTGTCTTGGTGTACCAACCGATGGTATGGCTT
TATGTACAGGTAGTTGGGATTCTCTCCTCAAGATTTGGGCTTAAATTTTTTAATAATATT
AACATAATAATAATAATAATAATAATAATAATAATTATAAAAATAACAAAAATAATATCA
ACAATACTATCAAATTTCACCTCACTCATTTAAAATTCACATCAACAACACACGCAACTT
CTCACACAACCATTAATTATGTCGTTTTCCCCAGTATCTTTCCAACAATTAATTGTCCTT
GTATAATATTATAAACAATTACAACCCCA
sequence update 1999. 2.23
Translated Amino Acid sequence 
tkre*lyyiifffislsffffffksinqlnhl*fy*ttiiyk*i*kkni*KMSSDISEKI
QQARRDAESMKEQIRANRDVMNDTTLKTFTRDL---

---HEADINAVQYFPNGLSFGTGSDDASCRLFDIRADRELMQYTHDNILCGITSVGFSFS
GRFLFAGYDDFTCNVWDTLKGERVLSLTGHGNRVSCLGVPTDGMALCTGSWDSLLKIWA*
if**y*hnnnnnnnnnnyknnknninntikfhlthlkftstthatshttinyvvfpsifp
tincpciil*tittp
Translated Amino Acid sequence (All Frames) 
Frame A:
hkkrivvlynfffyfsfffffffqinqsikspvillnnyni*idlkkkyiknviryfrkn
stskkrc*inertn*skqrcne*yysqnfys*f---

---vtklilmqfnisqmvyhlvlvlmmlhvdylifvpivn*cntptttfyvvlhplvfhf
qvvsyllvtmislatfgih*rvnvfsl*lvtvivylvlvyqpmvwlyvqvvgilssrfgl
kffnniniiiiiiiiiiiikitkiistilsnftsli*nshqqhtqlltqplimsfspvsf
qqlivlv*yykqlqp

Frame B:
tkre*lyyiifffislsffffffksinqlnhl*fy*ttiiyk*i*kkni*KMSSDISEKI
QQARRDAESMKEQIRANRDVMNDTTLKTFTRDL---

---srs*y*cssifpkwfiiwywf**cfm*ii*yscrs*inaihprqhfmwyyirwffif
rsflicwlr*fhlqrlgyikg*tcslfnwsr*scilswctnrwygfmyr*lgfspqdlgl
nfliilt**********l*k*qk*yqqyyqisphsfkihinntrnfshnh*lcrfpqyls
nn*lslyniinnynp

Frame C:
qkenscti*ffflflflfffffsnqsin*itcnftkql*yinrfkkkiykkchqifqkkf
nkqeemlnq*knkleqtem**millsklllviy---

---HEADINAVQYFPNGLSFGTGSDDASCRLFDIRADRELMQYTHDNILCGITSVGFSFS
GRFLFAGYDDFTCNVWDTLKGERVLSLTGHGNRVSCLGVPTDGMALCTGSWDSLLKIWA*
if**y*hnnnnnnnnnnyknnknninntikfhlthlkftstthatshttinyvvfpsifp
tincpciil*tittp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD136 (SLD136Q) /CSM/SL/SLD1-B/SLD136Q.Seq.d/                       1033   0.0
AFO321 (AFO321Q) /CSM/AF/AFO3-A/AFO321Q.Seq.d/                        712   0.0
AFK519 (AFK519Q) /CSM/AF/AFK5-A/AFK519Q.Seq.d/                        712   0.0
AFJ370 (AFJ370Q) /CSM/AF/AFJ3-C/AFJ370Q.Seq.d/                        712   0.0
SSD702 (SSD702Q) /CSM/SS/SSD7-A/SSD702Q.Seq.d/                        704   0.0
VSC528 (VSC528Q) /CSM/VS/VSC5-B/VSC528Q.Seq.d/                        692   0.0
SLI332 (SLI332Q) /CSM/SL/SLI3-B/SLI332Q.Seq.d/                        680   0.0
VFK342 (VFK342Q) /CSM/VF/VFK3-B/VFK342Q.Seq.d/                        660   0.0
SLI471 (SLI471Q) /CSM/SL/SLI4-C/SLI471Q.Seq.d/                        640   0.0
SSE542 (SSE542Q) /CSM/SS/SSE5-B/SSE542Q.Seq.d/                        555   e-157
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...   656   0.0    8
(AU052318) Dictyostelium discoideum slug cDNA, clone SLD136.      710   0.0    2
(BJ343105) Dictyostelium discoideum cDNA clone:dda22e05, 3' ...   710   0.0    2
(AU262625) Dictyostelium discoideum vegetative cDNA clone:VS...   692   0.0    2
(AU053294) Dictyostelium discoideum slug cDNA, clone SLI332.      680   0.0    2
(AU037491) Dictyostelium discoideum slug cDNA, clone SSD702.      702   0.0    3
(X73641) Dictyostelium discoideum gene for G-protein beta-su...   698   0.0    2
(AU053367) Dictyostelium discoideum slug cDNA, clone SLI471.      387   0.0    3
(BJ346107) Dictyostelium discoideum cDNA clone:dda29j05, 3' ...   710   0.0    3
(C92435) Dictyostelium discoideum slug cDNA, clone SSE542.        555   0.0    2
dna update 2009. 3.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36408) RecName: Full=Guanine nucleotide-binding protein subuni...   248   1e-64
AY661671_1(AY661671|pid:none) Lentinula edodes guanine nucleotid...   205   2e-51
AF536325_1(AF536325|pid:none) Ustilago maydis G-protein beta sub...   204   2e-51
AF091120_1(AF091120|pid:none) Filobasidiella neoformans G-protei...   200   6e-50
AF056182_1(AF056182|pid:none) Emericella nidulans G-protein beta...   191   3e-47
AY884129_1(AY884129|pid:none) Thanatephorus cucumeris guanine nu...   191   3e-47
DQ863323_1(DQ863323|pid:none) Penicillium marneffei STE4-like pr...   190   5e-47
AY550249_1(AY550249|pid:none) Paracoccidioides brasiliensis smal...   190   5e-47
AF306565_1(AF306565|pid:none) Pneumocystis carinii guanine nucle...   189   8e-47
AB047301_1(AB047301|pid:none) Halocynthia roretzi HrG-beta mRNA ...   189   1e-46
protein update 2009. 6. 2
PSORT 

 psg: 0.38  gvh: 0.33  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLD136 is cyt
5' end seq. ID SLD136F
5' end seq. 
>SLD136F.Seq
CACAAAAAGAGAATAGTTGTACTATATAATTTTTTTTTTTATTTCTCTTTCTTTTTTTTT
TTTTTTTTTCAAATCAATCAATCAATTAAATCACCTGTAATTTTACTAAACAACTATAAT
ATATAAATAGATTTAAAAAAAAAATATATAAAAAATGTCATCAGATATTTCAGAAAAAAT
TCAACAAGCAAGAAGAGATGCTGAATCAATGAAAGAACAAATTAGAGCAAACAGAGATGT
AATGAATGATACTACTCTCAAAACTTTTACTCGTGATTTAC----------
Length of 5' end seq. 281
3' end seq. ID SLD136Z
3' end seq. 
>SLD136Z.Seq
----------GTCACGAAGCTGATATTAATGCAGTTCAATATTTCCCAAATGGTTTATCA
TTTGGTACTGGTTCTGATGATGCTTCATGTAGATTATTTGATATTCGTGCCGATCGTGAA
TTAATGCAATACACCCACGACAACATTTTATGTGGTATTACATCCGTTGGTTTTTCATTT
TCAGGTCGTTTCTTATTTGCTGGTTACGATGATTTCACTTGCAACGTTTGGGATACATTA
AAGGGTGAACGTGTTCTCTCTTTAACTGGTCACGGTAATCGTGTATCTTGTCTTGGTGTA
CCAACCGATGGTATGGCTTTATGTACAGGTAGTTGGGATTCTCTCCTCAAGATTTGGGCT
TAAATTTTTTAATAATATTAACATAATAATAATAATAATAATAATAATAATAATTATAAA
AATAACAAAAATAATATCAACAATACTATCAAATTTCACCTCACTCATTTAAAATTCACA
TCAACAACACACGCAACTTCTCACACAACCATTAATTATGTCGTTTTCCCCAGTATCTTT
CCAACAATTAATTGTCCTTGTATAATATTATAAACAATTACAACCCCA
Length of 3' end seq. 578
Connected seq. ID SLD136P
Connected seq. 
>SLD136P.Seq
CACAAAAAGAGAATAGTTGTACTATATAATTTTTTTTTTTATTTCTCTTTCTTTTTTTTT
TTTTTTTTTCAAATCAATCAATCAATTAAATCACCTGTAATTTTACTAAACAACTATAAT
ATATAAATAGATTTAAAAAAAAAATATATAAAAAATGTCATCAGATATTTCAGAAAAAAT
TCAACAAGCAAGAAGAGATGCTGAATCAATGAAAGAACAAATTAGAGCAAACAGAGATGT
AATGAATGATACTACTCTCAAAACTTTTACTCGTGATTTAC----------GTCACGAAG
CTGATATTAATGCAGTTCAATATTTCCCAAATGGTTTATCATTTGGTACTGGTTCTGATG
ATGCTTCATGTAGATTATTTGATATTCGTGCCGATCGTGAATTAATGCAATACACCCACG
ACAACATTTTATGTGGTATTACATCCGTTGGTTTTTCATTTTCAGGTCGTTTCTTATTTG
CTGGTTACGATGATTTCACTTGCAACGTTTGGGATACATTAAAGGGTGAACGTGTTCTCT
CTTTAACTGGTCACGGTAATCGTGTATCTTGTCTTGGTGTACCAACCGATGGTATGGCTT
TATGTACAGGTAGTTGGGATTCTCTCCTCAAGATTTGGGCTTAAATTTTTTAATAATATT
AACATAATAATAATAATAATAATAATAATAATAATTATAAAAATAACAAAAATAATATCA
ACAATACTATCAAATTTCACCTCACTCATTTAAAATTCACATCAACAACACACGCAACTT
CTCACACAACCATTAATTATGTCGTTTTCCCCAGTATCTTTCCAACAATTAATTGTCCTT
GTATAATATTATAAACAATTACAACCCCA
Length of connected seq. 859
Full length Seq ID -
Full length Seq. -
Length of full length seq. -