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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD120
Library SL
(Link to library)
Clone ID SLD120
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLD120Z
(Link to Original site)
Representative DNA sequence 
>SLD120 (SLD120Q) /CSM/SL/SLD1-A/SLD120Q.Seq.d/
XXXXXXXXXXTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATCA
TACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAA
GCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTATCCACGAAACCACCTAT
AACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAATGTCGTCTTA
TCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAAGAATTAACTGCT
TTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAGAACGTAAATACTCTGTC
TGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAATGTGGATCTCCAAA
GAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTTTCTAAACAATTAAA
ACTAGTGATGAAAGTGCTTCTCACACAAACAAATATATTTAAATGTATAATAATAATAAA
ATATAATTATTTTTAATGGTTGTTGATCTTTATCCGACTATCAAAAAAAA
sequence update 1998. 6. 8
Translated Amino Acid sequence 
---EAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYN
SIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVW
IGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tiktsdesashtnkyi*mynnnki
*lflmvvdlyptikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---*s*nanccliisprkiiritrrsshhhr**tfplprsplptiilrygiswyprnhl*
lhhem*c*yp*rfir*crliwwynyvpryc*syeqrincfspinhen*nhcstrt*ilcl
dwwiylsftlnfptnvdlqrri*rirsincpqkmflnn*n***kcfshkqiylnv****n
iiifngc*slsdyqkk


Frame B:
---EAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYN
SIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVW
IGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tiktsdesashtnkyi*mynnnki
*lflmvvdlyptikk


Frame C:
---klkckllphhqpsknhtnyqtvksspsvmnvsvaqkpssnhhs*vwnqlvstkppit
ps*nvmlisvkiytvmssylvvqlcsqvlliv*tkn*ll*phqp*klksllhqnvntlsg
lvdls*lhsqlsnkcgspkknmtnqvhqlstenvskqlklvmkvlltqtnifkciiiiky
nyf*wllifirlskk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO858 (VFO858Q) /CSM/VF/VFO8-C/VFO858Q.Seq.d/                        995   0.0
VFN701 (VFN701Q) /CSM/VF/VFN7-A/VFN701Q.Seq.d/                        995   0.0
VFM863 (VFM863Q) /CSM/VF/VFM8-C/VFM863Q.Seq.d/                        995   0.0
VFM725 (VFM725Q) /CSM/VF/VFM7-B/VFM725Q.Seq.d/                        995   0.0
VFM720 (VFM720Q) /CSM/VF/VFM7-A/VFM720Q.Seq.d/                        995   0.0
VFM705 (VFM705Q) /CSM/VF/VFM7-A/VFM705Q.Seq.d/                        995   0.0
VFL589 (VFL589Q) /CSM/VF/VFL5-D/VFL589Q.Seq.d/                        995   0.0
VFK573 (VFK573Q) /CSM/VF/VFK5-D/VFK573Q.Seq.d/                        995   0.0
VFJ832 (VFJ832Q) /CSM/VF/VFJ8-B/VFJ832Q.Seq.d/                        995   0.0
VFJ616 (VFJ616Q) /CSM/VF/VFJ6-A/VFJ616Q.Seq.d/                        995   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052305) Dictyostelium discoideum slug cDNA, clone SLD120.      991   0.0    2
(AU034159) Dictyostelium discoideum slug cDNA, clone SLC116.      991   0.0    2
(AU039294) Dictyostelium discoideum slug cDNA, clone SLH364.      991   0.0    2
(AU284462) Dictyostelium discoideum gamete cDNA clone:FC-AX1...   991   0.0    2
(AU285049) Dictyostelium discoideum gamete cDNA clone:FCL-AC...   991   0.0    2
(AU052206) Dictyostelium discoideum slug cDNA, clone SLA238.      991   0.0    2
(AU284804) Dictyostelium discoideum gamete cDNA clone:FC-BL1...   991   0.0    2
(AU039293) Dictyostelium discoideum slug cDNA, clone SLH363.      991   0.0    2
(AU033648) Dictyostelium discoideum slug cDNA, clone SLB267.      991   0.0    2
(AU034462) Dictyostelium discoideum slug cDNA, clone SLC167.      991   0.0    2
dna update 2009. 3.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   307   1e-82
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   307   1e-82
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        307   1e-82
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   303   2e-81
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   303   2e-81
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   303   2e-81
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          300   1e-80
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   300   2e-80
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   299   3e-80
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   298   9e-80
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLD120 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD120Z
3' end seq. 
>SLD120Z.Seq
----------TTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATCA
TACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAA
GCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTATCCACGAAACCACCTAT
AACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAATGTCGTCTTA
TCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAAGAATTAACTGCT
TTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAGAACGTAAATACTCTGTC
TGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAATGTGGATCTCCAAA
GAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTTTCTAAACAATTAAA
ACTAGTGATGAAAGTGCTTCTCACACAAACAAATATATTTAAATGTATAATAATAATAAA
ATATAATTATTTTTAATGGTTGTTGATCTTTATCCGACTATCAAAAAAAA
Length of 3' end seq. 580
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -