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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC886
Library SL
(Link to library)
Clone ID SLC886
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID SLC886Z
(Link to Original site)
Representative DNA sequence 
>SLC886 (SLC886Q) /CSM/SL/SLC8-D/SLC886Q.Seq.d/
XXXXXXXXXXCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCA
ATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGG
TGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCA
CACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTA
TGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTAC
TGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGT
TATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGT
ATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCC
ACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCAC
TGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGA
CAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAATATAGTAA
TCAAATCTAAAAAAAATTTTAAAAAAAAAATAATA
sequence update 1998. 5.17
Translated Amino Acid sequence 
---EGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHT
DAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVI
GEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKATE
VALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfkysnqi*kkf*kknn
Translated Amino Acid sequence (All Frames) 
Frame A:
---qkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmkt*evsvsifmmspst
lmpstevvvkssqllvvysmlln*lppqls*nqst**kllpqktllvvftlysivvevll
lvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvssiiglqlvlstkirkpl
ksl*pperekv*pqksqiltnstknskqfkshfefsnivikskknfkkkii


Frame B:
---rr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**kherypfqsl*chpph
*chpqrwwsnhpncssctlcc*inclpnslrtnllsrnycprkrywwyllctqss*rycy
w*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmclrslgfnwccqqr*esh*
srfshqkekrfsprnprs*qiprktlnnlsrtlsfqi**snlkkilkkk*


Frame C:
---EGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHT
DAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVI
GEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKATE
VALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfkysnqi*kkf*kknn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH782 (SLH782Q) /CSM/SL/SLH7-D/SLH782Q.Seq.d/                       1304   0.0
SLE722 (SLE722Q) /CSM/SL/SLE7-A/SLE722Q.Seq.d/                       1304   0.0
SLC886 (SLC886Q) /CSM/SL/SLC8-D/SLC886Q.Seq.d/                       1304   0.0
SLB237 (SLB237Q) /CSM/SL/SLB2-B/SLB237Q.Seq.d/                       1304   0.0
VHP749 (VHP749Q) /CSM/VH/VHP7-C/VHP749Q.Seq.d/                       1298   0.0
VHO803 (VHO803Q) /CSM/VH/VHO8-A/VHO803Q.Seq.d/                       1298   0.0
VHO104 (VHO104Q) /CSM/VH/VHO1-A/VHO104Q.Seq.d/                       1298   0.0
VHI806 (VHI806Q) /CSM/VH/VHI8-A/VHI806Q.Seq.d/                       1298   0.0
VHD305 (VHD305Q) /CSM/VH/VHD3-A/VHD305Q.Seq.d/                       1298   0.0
VHD106 (VHD106Q) /CSM/VH/VHD1-A/VHD106Q.Seq.d/                       1298   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039543) Dictyostelium discoideum slug cDNA, clone SLE722.     1304   0.0    1
(AU039435) Dictyostelium discoideum slug cDNA, clone SLH782.     1304   0.0    1
(AU034446) Dictyostelium discoideum slug cDNA, clone SLC886.     1304   0.0    1
(AU033620) Dictyostelium discoideum slug cDNA, clone SLB237.     1304   0.0    1
(BJ446365) Dictyostelium discoideum cDNA clone:ddv62b13, 3' ...  1298   0.0    1
(BJ445613) Dictyostelium discoideum cDNA clone:ddv60f02, 3' ...  1298   0.0    1
(BJ445302) Dictyostelium discoideum cDNA clone:ddv59g01, 3' ...  1298   0.0    1
(BJ442808) Dictyostelium discoideum cDNA clone:ddv51d03, 3' ...  1298   0.0    1
(BJ442717) Dictyostelium discoideum cDNA clone:ddv50c22, 3' ...  1298   0.0    1
(BJ442693) Dictyostelium discoideum cDNA clone:ddv50n18, 3' ...  1298   0.0    1
dna update 2009. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation...   267   2e-70
DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ...   265   7e-70
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat...   265   1e-69
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote...   263   3e-69
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi...   263   4e-69
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088...   263   5e-69
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328...   263   5e-69
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120...   262   8e-69
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280...   261   1e-68
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio...   261   1e-68
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC886 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC886Z
3' end seq. 
>SLC886Z.Seq
----------CCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCA
ATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGG
TGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCA
CACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTA
TGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTAC
TGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGT
TATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGT
ATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCC
ACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCAC
TGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGA
CAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAATATAGTAA
TCAAATCTAAAAAAAATTTTAAAAAAAAAATAATA
Length of 3' end seq. 685
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -