SLC878
Library SL
(Link to library)
Clone ID SLC878
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14938-1
Original site URL
Representative seq. ID SLC878P
(Link to Original site)
Representative DNA sequence
>SLC878 (SLC878Q) /CSM/SL/SLC8-D/SLC878Q.Seq.d/
AAAATTATATGATTTTTGTCGTATATCATTAATCAGTTCCCACAACATCCATCACAACAC
ACAAACTCATCACCAATCTATCAAATAAACCGATCTTTTAAACCCTCAACCAAAAAAAAC
TATCAATTAAAATGATATGTGCAATTTCGGGTTCAACAACAGAAGAACCAGTAATTTCAA
CAAAAACTGGAAATGTTTATGAAAAAAGATTGATTGAAAAATATATAGATACAAATGGTA
AAGAGCCAACAACCGGTGAACCATTAGGTTTGAGTGATTTAATCACTGTAAAGATTGGAA
AAACAGTAAAGCCAAGACCAACCACTGCCACTAGTATTCCAAGTATGTTGCAATTGTTTC
AAAATGAATGGGATTCTTTAATGTTGGAAACCTTCACATTGAAACAACAACATGAAACTG
TTCGTCAAGAGTTGGCACATTCAATGTATCAATATGATGCTGCCTGTAGAGTAATCGCTA
GATTAGTTAAAGAAAGAGATGCTGCAAGATCTGCTTTAGCAAACGCTCGTAATATAGTAC
AACAACAACAACAACAAACAAATAACAACAACAACAACAACAATAATAAAGATGTTGAAA
TGTCATCAGCATCAACACCATCATCATCAGAAGATAATTTATTAGACTCAACAAXXXXXX
XXXXAAAGTCCATCTAAAAAGACCTACACTCAATATAAATCCACTTATCAATTCGCCCAT
AAAGCTAGTGTCACCGATATATCGTTACATGTATTGGGAGATTATATAATTTCATCTTCA
CTCGATAAATCATTGAATATGTACGATATTGTCAATGGAACTCATTTGACTAGCTTTGGT
CAATCTCAACAACTTTGTTACACTAGTGTCGCCTTCCACCCAGATGGTATGTTTTTCGCA
GCCGGTACTCAAAATGGTGTGGTCAAAATCTTTGATCTCAAGAGTAAAGTAAACAGTTTC
AACTTTCAAGGTCTTTCAACCGCTGTCAATTGTATCTCCTTCTCTGAGAATGGTTACTAT
TTAACCGCAGCCGATAATAACACTGTGAAATTATTTGATCTTCGTAAAGCTGCCACTAAA
AACTCACCAGATATTCAAACCATCACTTTGGATAATCAACAAATTAAATCTATCAATTTC
GATTACTCTAGCCAATATCTTGGTGTAGCATCTTCCAATCAAATCAATCTTTACAGTTGC
AAATCAAAACAAAAACCACCAATCTCTTCTATTCATTCAATTGATTCAGATTGTTTAGAC
TTTAAATGGGCAAGACCAAATTCAAATTTCTTTGTAACTTCTTCCTCTTCTAAAAATATT
GTCAATATCTTTTCCAACTA
sequence update 1999. 1.14
Translated Amino Acid sequence
nymifvvyh*svpttsitthklitnlsnkpif*TLNQKKLSIKMICAISGSTTEEPVIST
KTGNVYEKRLIEKYIDTNGKEPTTGEPLGLSDLITVKIGKTVKPRPTTATSIPSMLQLFQ
NEWDSLMLETFTLKQQHETVRQELAHSMYQYDAACRVIARLVKERDAARSALANARNIVQ
QQQQQTNNNNNNNNNKDVEMSSASTPSSSEDNLLDST---

---SPSKKTYTQYKSTYQFAHKASVTDISLHVLGDYIISSSLDKSLNMYDIVNGTHLTSF
GQSQQLCYTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNFQGLSTAVNCISFSENGY
YLTAADNNTVKLFDLRKAATKNSPDIQTITLDNQQIKSINFDYSSQYLGVASSNQINLYS
CKSKQKPPISSIHSIDSDCLDFKWARPNSNFFVTSSSSKNIVNIFSN


Translated Amino Acid sequence (All Frames)
Frame A:
kii*flsyiinqfpqhpsqhtnsspiyqinrsfkpstkknyqlk*yvqfrvqqqknq*fq
qklemfmkkd*lkni*iqmvksqqpvnh*v*vi*sl*rlekq*sqdqplplvfqvccncf
kmngil*cwkpsh*nnnmklfvkswhiqcinmmlpve*sld*lkkemlqdll*qtlvi*y
nnnnnkqittttttiikmlkchqhqhhhhqkiiy*tqq---

---kvhlkrptlninplinspiklvspiyrymyweii*fhlhsinh*ictilsmeli*la
lvnlnnfvtlvspstqmvcfsqpvlkmvwskslisrvk*tvstfkvfqplsivspslrmv
ti*pqpiitl*nylifvklplkthqifkpslwiinklnlsisitlanilv*hlpiksift
vanqnknhqsllfiqliqiv*tlngqdqiqisl*llpllkilsisfpt

Frame B:
klydfcrislisshnihhntqthhqsik*tdllnpqpkktin*ndmcnfgfnnrrtsnfn
knwkcl*kkid*kiyrykw*rannr*tirfe*fnhckdwknskaktnhch*yskyvaivs
k*mgffnvgnlhiettt*ncssrvgtfnvsi*ccl*snr*is*rkrcckicfskrs*yst
tttttnk*qqqqqq**rc*nvisintiiirr*firln---

---ksi*kdlhsi*ihlsirp*s*chryivtcigrlynfiftr*iieyvrycqwnsfd*l
wsisttllh*crlpprwyvfrsryskwcgqnl*sqe*skqfqlsrsfnrcqlylll*ewl
lfnrsr**hceii*ss*sch*kltrysnhhfg*stn*iyqfrll*piswcsifqsnqslq
lqiktkttnlfysfn*frlfrl*mgktkfkflcnfflf*kycqylfql

Frame C:
nymifvvyh*svpttsitthklitnlsnkpif*TLNQKKLSIKMICAISGSTTEEPVIST
KTGNVYEKRLIEKYIDTNGKEPTTGEPLGLSDLITVKIGKTVKPRPTTATSIPSMLQLFQ
NEWDSLMLETFTLKQQHETVRQELAHSMYQYDAACRVIARLVKERDAARSALANARNIVQ
QQQQQTNNNNNNNNNKDVEMSSASTPSSSEDNLLDST---

---SPSKKTYTQYKSTYQFAHKASVTDISLHVLGDYIISSSLDKSLNMYDIVNGTHLTSF
GQSQQLCYTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNFQGLSTAVNCISFSENGY
YLTAADNNTVKLFDLRKAATKNSPDIQTITLDNQQIKSINFDYSSQYLGVASSNQINLYS
CKSKQKPPISSIHSIDSDCLDFKWARPNSNFFVTSSSSKNIVNIFSN

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC878 (SLC878Q) /CSM/SL/SLC8-D/SLC878Q.Seq.d/ 1441 0.0
FC-AR11 (FC-AR11Q) /CSM/FC/FC-AR/FC-AR11Q.Seq.d/ 1340 0.0
SFD267 (SFD267Q) /CSM/SF/SFD2-C/SFD267Q.Seq.d/ 1304 0.0
CFC701 (CFC701Q) /CSM/CF/CFC7-A/CFC701Q.Seq.d/ 1300 0.0
VFE320 (VFE320Q) /CSM/VF/VFE3-A/VFE320Q.Seq.d/ 1298 0.0
AFN532 (AFN532Q) /CSM/AF/AFN5-B/AFN532Q.Seq.d/ 1298 0.0
AFM628 (AFM628Q) /CSM/AF/AFM6-B/AFM628Q.Seq.d/ 1298 0.0
AFH587 (AFH587Q) /CSM/AF/AFH5-D/AFH587Q.Seq.d/ 1298 0.0
VFI741 (VFI741Q) /CSM/VF/VFI7-B/VFI741Q.Seq.d/ 1296 0.0
SFE587 (SFE587Q) /CSM/SF/SFE5-D/SFE587Q.Seq.d/ 1291 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 1340 0.0 1
(AU034440) Dictyostelium discoideum slug cDNA, clone SLC878. 1340 0.0 1
(C24329) Dictyostelium discoideum gamete cDNA, clone FC-AR11. 1340 0.0 1
(BJ399806) Dictyostelium discoideum cDNA clone:dds7e18, 3' e... 1304 0.0 1
(BJ374209) Dictyostelium discoideum cDNA clone:ddc6b01, 3' e... 1300 0.0 1
(BJ430868) Dictyostelium discoideum cDNA clone:ddv9h05, 3' e... 1298 0.0 1
(BJ347171) Dictyostelium discoideum cDNA clone:dda26g08, 3' ... 1298 0.0 1
(BJ345673) Dictyostelium discoideum cDNA clone:dda28o07, 3' ... 1298 0.0 1
(BJ343707) Dictyostelium discoideum cDNA clone:dda16m21, 3' ... 1298 0.0 1
(BJ432286) Dictyostelium discoideum cDNA clone:ddv18b11, 3' ... 1296 0.0 1
dna update 2009. 3. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q7KWK5) RecName: Full=Pre-mRNA-processing factor 19 homolog; Al... 428 e-118
AC146759_31(AC146759|pid:none) Medicago truncatula clone mth2-17... 166 2e-39
BT034088_1(BT034088|pid:none) Zea mays full-length cDNA clone ZM... 163 1e-38
AC022457_10(AC022457|pid:none) Oryza sativa chromosome 10 BAC OS... 162 2e-38
(Q94BR4) RecName: Full=Pre-mRNA-processing factor 19 homolog 1; ... 160 1e-37
AM270324_36(AM270324|pid:none) Aspergillus niger contig An14c017... 158 4e-37
AC002332_11(AC002332|pid:none) Arabidopsis thaliana chromosome 2... 155 3e-36
(O22785) RecName: Full=Pre-mRNA-processing factor 19 homolog 2; ... 155 3e-36
EU417752_1(EU417752|pid:none) Sus scrofa pre-mRNA processing fac... 152 3e-35
EU591959_1(EU591959|pid:none) Sus scrofa PRP19/PSO4 pre-mRNA pro... 152 3e-35
protein update 2009. 6. 2
PSORT

psg: 0.91 gvh: 0.55 alm: 0.45 top: 0.27 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: extracellular, including cell wall
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLC878 is cyt

5' end seq. ID SLC878F
5' end seq.
>SLC878F.Seq
AAAATTATATGATTTTTGTCGTATATCATTAATCAGTTCCCACAACATCCATCACAACAC
ACAAACTCATCACCAATCTATCAAATAAACCGATCTTTTAAACCCTCAACCAAAAAAAAC
TATCAATTAAAATGATATGTGCAATTTCGGGTTCAACAACAGAAGAACCAGTAATTTCAA
CAAAAACTGGAAATGTTTATGAAAAAAGATTGATTGAAAAATATATAGATACAAATGGTA
AAGAGCCAACAACCGGTGAACCATTAGGTTTGAGTGATTTAATCACTGTAAAGATTGGAA
AAACAGTAAAGCCAAGACCAACCACTGCCACTAGTATTCCAAGTATGTTGCAATTGTTTC
AAAATGAATGGGATTCTTTAATGTTGGAAACCTTCACATTGAAACAACAACATGAAACTG
TTCGTCAAGAGTTGGCACATTCAATGTATCAATATGATGCTGCCTGTAGAGTAATCGCTA
GATTAGTTAAAGAAAGAGATGCTGCAAGATCTGCTTTAGCAAACGCTCGTAATATAGTAC
AACAACAACAACAACAAACAAATAACAACAACAACAACAACAATAATAAAGATGTTGAAA
TGTCATCAGCATCAACACCATCATCATCAGAAGATAATTTATTAGACTCAACAA------
----
Length of 5' end seq. 654
3' end seq. ID SLC878Z
3' end seq.
>SLC878Z.Seq
----------AAAGTCCATCTAAAAAGACCTACACTCAATATAAATCCACTTATCAATTC
GCCCATAAAGCTAGTGTCACCGATATATCGTTACATGTATTGGGAGATTATATAATTTCA
TCTTCACTCGATAAATCATTGAATATGTACGATATTGTCAATGGAACTCATTTGACTAGC
TTTGGTCAATCTCAACAACTTTGTTACACTAGTGTCGCCTTCCACCCAGATGGTATGTTT
TTCGCAGCCGGTACTCAAAATGGTGTGGTCAAAATCTTTGATCTCAAGAGTAAAGTAAAC
AGTTTCAACTTTCAAGGTCTTTCAACCGCTGTCAATTGTATCTCCTTCTCTGAGAATGGT
TACTATTTAACCGCAGCCGATAATAACACTGTGAAATTATTTGATCTTCGTAAAGCTGCC
ACTAAAAACTCACCAGATATTCAAACCATCACTTTGGATAATCAACAAATTAAATCTATC
AATTTCGATTACTCTAGCCAATATCTTGGTGTAGCATCTTCCAATCAAATCAATCTTTAC
AGTTGCAAATCAAAACAAAAACCACCAATCTCTTCTATTCATTCAATTGATTCAGATTGT
TTAGACTTTAAATGGGCAAGACCAAATTCAAATTTCTTTGTAACTTCTTCCTCTTCTAAA
AATATTGTCAATATCTTTTCCAACTA
Length of 3' end seq. 676
Connected seq. ID SLC878P
Connected seq.
>SLC878P.Seq
AAAATTATATGATTTTTGTCGTATATCATTAATCAGTTCCCACAACATCCATCACAACAC
ACAAACTCATCACCAATCTATCAAATAAACCGATCTTTTAAACCCTCAACCAAAAAAAAC
TATCAATTAAAATGATATGTGCAATTTCGGGTTCAACAACAGAAGAACCAGTAATTTCAA
CAAAAACTGGAAATGTTTATGAAAAAAGATTGATTGAAAAATATATAGATACAAATGGTA
AAGAGCCAACAACCGGTGAACCATTAGGTTTGAGTGATTTAATCACTGTAAAGATTGGAA
AAACAGTAAAGCCAAGACCAACCACTGCCACTAGTATTCCAAGTATGTTGCAATTGTTTC
AAAATGAATGGGATTCTTTAATGTTGGAAACCTTCACATTGAAACAACAACATGAAACTG
TTCGTCAAGAGTTGGCACATTCAATGTATCAATATGATGCTGCCTGTAGAGTAATCGCTA
GATTAGTTAAAGAAAGAGATGCTGCAAGATCTGCTTTAGCAAACGCTCGTAATATAGTAC
AACAACAACAACAACAAACAAATAACAACAACAACAACAACAATAATAAAGATGTTGAAA
TGTCATCAGCATCAACACCATCATCATCAGAAGATAATTTATTAGACTCAACAA------
----AAAGTCCATCTAAAAAGACCTACACTCAATATAAATCCACTTATCAATTCGCCCAT
AAAGCTAGTGTCACCGATATATCGTTACATGTATTGGGAGATTATATAATTTCATCTTCA
CTCGATAAATCATTGAATATGTACGATATTGTCAATGGAACTCATTTGACTAGCTTTGGT
CAATCTCAACAACTTTGTTACACTAGTGTCGCCTTCCACCCAGATGGTATGTTTTTCGCA
GCCGGTACTCAAAATGGTGTGGTCAAAATCTTTGATCTCAAGAGTAAAGTAAACAGTTTC
AACTTTCAAGGTCTTTCAACCGCTGTCAATTGTATCTCCTTCTCTGAGAATGGTTACTAT
TTAACCGCAGCCGATAATAACACTGTGAAATTATTTGATCTTCGTAAAGCTGCCACTAAA
AACTCACCAGATATTCAAACCATCACTTTGGATAATCAACAAATTAAATCTATCAATTTC
GATTACTCTAGCCAATATCTTGGTGTAGCATCTTCCAATCAAATCAATCTTTACAGTTGC
AAATCAAAACAAAAACCACCAATCTCTTCTATTCATTCAATTGATTCAGATTGTTTAGAC
TTTAAATGGGCAAGACCAAATTCAAATTTCTTTGTAACTTCTTCCTCTTCTAAAAATATT
GTCAATATCTTTTCCAACTA
Length of connected seq. 1330
Full length Seq ID -
Full length Seq. -
Length of full length seq. -