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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC866
Library SL
(Link to library)
Clone ID SLC866
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13181-1
Original site URL
Representative seq. ID SLC866E
(Link to Original site)
Representative DNA sequence 
>SLC866 (SLC866Q) /CSM/SL/SLC8-C/SLC866Q.Seq.d/
AATAATTACAGAACAAGCAGTACCAACAGTATTTACATGGTCAGGTGGAGGAAAGGATGT
ATATGTTTCAGGATCATTTAATAATTGGAAAGAAAAGATTCCACTCTCAAGAAGTGAGAA
AGATTTTACATTAATTTATAATTTAGCACCAGGTGTTCATCAATATAAATACATAGTAGA
TGGTAAATGGATTCATTCAACTGAACAACCAGTTGCCGCTGATATTAAAGGCAATTTATT
AAATTTTATTGAAGTTAAAAATAAAGATCCTTCAAATGATTTAAATACTTTAAAATTATC
ATCAACACCACCAGGTTCATATAGTAGAACTATACCAGAGGAGGAGGTTCAAAAAAATAC
CACCACCATCATTACCACCACATTTAAGAAGAGCACTTTTAAATACACAACCTTCAACAG
AGGATCCAACTTTATTACCATTACCACATCATGTTATGTTAAATCATTTATATTCATTAC
CAAGAAAAAACAAAGTTTCAATTTTAGGTGTTACTCATCGTTATAAAACAAAGTTTGTTA
CAACAGTATTATATAAACCAAATGGGTCATCATTGTCTGATGATTTGGAAGATTCTTAA
sequence update 1998. 5.16
Translated Amino Acid sequence 
IITEQAVPTVFTWSGGGKDVYVSGSFNNWKEKIPLSRSEKDFTLIYNLAPGVHQYKYIVD
GKWIHSTEQPVAADIKGNLLNFIEVKNKDPSNDLNTLKLSSTPPGSYSRTIPEEEVQKNT
TTIITTTFKKSTFKYTTFNRGSNFITITTSCYVKSFIFITKKKQSFNFRCYSSL*nkvcy
nsii*tkwviiv**fgrfl
Translated Amino Acid sequence (All Frames) 
Frame A:
nnyrtsstnsiymvrwrkgcicfrii**lerkdstlkk*erfyinl*fstrcssi*ihsr
w*mdsfn*ttscr*y*rqfikfy*s*k*rsfk*fkyfkiiinttrfi**nytrgggskky
hhhhyhhi*eehf*ihnlqqriqlyyhyhimlc*iiyihyqektkfqf*vllivikqsll
qqyyinqmghhclmiwkil


Frame B:
IITEQAVPTVFTWSGGGKDVYVSGSFNNWKEKIPLSRSEKDFTLIYNLAPGVHQYKYIVD
GKWIHSTEQPVAADIKGNLLNFIEVKNKDPSNDLNTLKLSSTPPGSYSRTIPEEEVQKNT
TTIITTTFKKSTFKYTTFNRGSNFITITTSCYVKSFIFITKKKQSFNFRCYSSL*nkvcy
nsii*tkwviiv**fgrfl


Frame C:
*lqnkqyqqylhgqveermymfqdhliigkkrfhsqevrkilh*fii*hqvfinint**m
vngfiqlnnqlplilkaiy*illklkikilqmi*il*nyhqhhqvhivelyqrrrfkkip
ppslpphlrrallntqpstedptllplphhvmlnhlyslprknkvsilgvthryktkfvt
tvlykpngsslsddleds*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC866 (SLC866Q) /CSM/SL/SLC8-C/SLC866Q.Seq.d/                       1146   0.0
SHL559 (SHL559Q) /CSM/SH/SHL5-C/SHL559Q.Seq.d/                        854   0.0
CHP221 (CHP221Q) /CSM/CH/CHP2-A/CHP221Q.Seq.d/                        722   0.0
SLA395 (SLA395Q) /CSM/SL/SLA3-D/SLA395Q.Seq.d/                         40   0.038
FC-AM18 (FC-AM18Q) /CSM/FC/FC-AM/FC-AM18Q.Seq.d/                       40   0.038
CHN320 (CHN320Q) /CSM/CH/CHN3-A/CHN320Q.Seq.d/                         38   0.15
AFO441 (AFO441Q) /CSM/AF/AFO4-B/AFO441Q.Seq.d/                         38   0.15
VHO770 (VHO770Q) /CSM/VH/VHO7-C/VHO770Q.Seq.d/                         36   0.59
SSK116 (SSK116Q) /CSM/SS/SSK1-A/SSK116Q.Seq.d/                         36   0.59
SSF841 (SSF841Q) /CSM/SS/SSF8-B/SSF841Q.Seq.d/                         36   0.59
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034431) Dictyostelium discoideum slug cDNA, clone SLC866.      694   0.0    2
(BJ408960) Dictyostelium discoideum cDNA clone:dds47e15, 3' ...   373   0.0    4
(BJ383174) Dictyostelium discoideum cDNA clone:ddc52i06, 3' ...   488   0.0    2
(BJ409097) Dictyostelium discoideum cDNA clone:dds39d01, 3' ...   351   e-116  2
(EC615650) SAAH-aaa67f03.g1 Agen 0058 Schmidtea mediterranea...    60   4e-06  2
(EG418089) SAAH-aab68e11.b1 Agen 0058 Schmidtea mediterranea...    60   4e-06  2
(EG403709) SAAH-aab73f04.b1 Agen 0058 Schmidtea mediterranea...    60   4e-06  2
(EG409792) SAAH-aaa45c03.b1 Agen 0058 Schmidtea mediterranea...    60   4e-06  2
(EE672368) SAAH-aab73f04.g1 Agen 0058 Schmidtea mediterranea...    60   4e-06  2
(EC617495) SAAH-aaa45c03.g1 Agen 0058 Schmidtea mediterranea...    60   4e-06  2
dna update 2009. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9QZH4) RecName: Full=5'-AMP-activated protein kinase subunit b...   112   1e-43
DQ640761_1(DQ640761|pid:none) Gallus gallus 5'-AMP-activated pro...   110   7e-43
BC053787_1(BC053787|pid:none) Xenopus laevis protein kinase, AMP...   110   7e-43
(Q6PAM0) RecName: Full=5'-AMP-activated protein kinase subunit b...   110   7e-43
BC155097_1(BC155097|pid:none) Xenopus tropicalis hypothetical pr...   110   3e-42
BC167448_1(BC167448|pid:none) Danio rerio zgc:172285, mRNA (cDNA...   108   1e-41
(P80386) RecName: Full=5'-AMP-activated protein kinase subunit b...   106   1e-41
U42411_1(U42411|pid:none) Rattus norvegicus 5'-AMP-activated pro...   106   1e-41
(Q9R078) RecName: Full=5'-AMP-activated protein kinase subunit b...   106   2e-41
AF108215_1(AF108215|pid:none) Mus musculus 5'-AMP-activated prot...   106   2e-41
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SLC866 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC866E
Full length Seq. 
>SLC866E.Seq
AATAATTACAGAACAAGCAGTACCAACAGTATTTACATGGTCAGGTGGAGGAAAGGATGT
ATATGTTTCAGGATCATTTAATAATTGGAAAGAAAAGATTCCACTCTCAAGAAGTGAGAA
AGATTTTACATTAATTTATAATTTAGCACCAGGTGTTCATCAATATAAATACATAGTAGA
TGGTAAATGGATTCATTCAACTGAACAACCAGTTGCCGCTGATATTAAAGGCAATTTATT
AAATTTTATTGAAGTTAAAAATAAAGATCCTTCAAATGATTTAAATACTTTAAAATTATC
ATCAACACCACCAGGTTCATATAGTAGAACTATACCAGAGGAGGAGGTTCAAAAAAATAC
CACCACCATCATTACCACCACATTTAAGAAGAGCACTTTTAAATACACAACCTTCAACAG
AGGATCCAACTTTATTACCATTACCACATCATGTTATGTTAAATCATTTATATTCATTAC
CAAGAAAAAACAAAGTTTCAATTTTAGGTGTTACTCATCGTTATAAAACAAAGTTTGTTA
CAACAGTATTATATAAACCAAATGGGTCATCATTGTCTGATGATTTGGAAGATTCTTAA
Length of full length seq. 599