SLC849
Library SL
(Link to library)
Clone ID SLC849
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID SLC849Z
(Link to Original site)
Representative DNA sequence
>SLC849 (SLC849Q) /CSM/SL/SLC8-C/SLC849Q.Seq.d/
XXXXXXXXXXCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGA
GCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGT
CAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACT
GAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTC
TTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGT
ATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACC
TCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGC
GTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAGAGTTATC
AAACATAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 5.16
Translated Amino Acid sequence
---CIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTE
KTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTS
SKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikhkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---lywcmasipc*yhrpkswstrlpsscrkkqedlqnrssstrrr*tnlnr*d*irfn*
kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkkeyhhsnwsccprenhsqihryl
qqvwsrsssnr*r*d*ifrrqeikin*glnsin*isesyqt*kkkkkkk


Frame B:
---CIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTE
KTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTS
SKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikhkkkkkkkk


Frame C:
---vlvhgihpvlvppsqelvnsvtiivsketrrftesvklnqktvnksqpvrlnsi*lk
rlsiqwvvslttvwlnmns*clkvvllvqerep*p*ervsplklvvlpsrkslsnssipp
aslvtvfikplkirlnisasrnqdqlrlkfnkldfrelsnikkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI163 (VSI163Q) /CSM/VS/VSI1-C/VSI163Q.Seq.d/ 944 0.0
VFN362 (VFN362Q) /CSM/VF/VFN3-C/VFN362Q.Seq.d/ 944 0.0
VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/ 944 0.0
VFF813 (VFF813Q) /CSM/VF/VFF8-A/VFF813Q.Seq.d/ 944 0.0
VFD735 (VFD735Q) /CSM/VF/VFD7-B/VFD735Q.Seq.d/ 944 0.0
VFC683 (VFC683Q) /CSM/VF/VFC6-D/VFC683Q.Seq.d/ 944 0.0
SLK605 (SLK605Q) /CSM/SL/SLK6-A/SLK605Q.Seq.d/ 944 0.0
SLK562 (SLK562Q) /CSM/SL/SLK5-C/SLK562Q.Seq.d/ 944 0.0
SLI874 (SLI874Q) /CSM/SL/SLI8-D/SLI874Q.Seq.d/ 944 0.0
SLI739 (SLI739Q) /CSM/SL/SLI7-B/SLI739Q.Seq.d/ 944 0.0

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU284555) Dictyostelium discoideum gamete cDNA clone:FC-BC2... 944 0.0 1
(AU284459) Dictyostelium discoideum gamete cDNA clone:FC-AX0... 944 0.0 1
(AU284431) Dictyostelium discoideum gamete cDNA clone:FC-AU2... 944 0.0 1
(AU284329) Dictyostelium discoideum gamete cDNA clone:FC-AM0... 944 0.0 1
(AU268249) Dictyostelium discoideum vegetative cDNA clone:VS... 944 0.0 1
(AU054079) Dictyostelium discoideum slug cDNA, clone SLK562. 944 0.0 1
(AU053542) Dictyostelium discoideum slug cDNA, clone SLI874. 944 0.0 1
(AU053482) Dictyostelium discoideum slug cDNA, clone SLI739. 944 0.0 1
(AU053422) Dictyostelium discoideum slug cDNA, clone SLI619. 944 0.0 1
(AU053342) Dictyostelium discoideum slug cDNA, clone SLI430. 944 0.0 1
dna update 2009. 3. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3; &JC4254(JC4254... 298 4e-80
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15... 189 3e-47
AM048985_1(AM048985|pid:none) Micromalthus debilis partial mRNA ... 187 9e-47
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr... 187 2e-46
EU999182_1(EU999182|pid:none) Artemia franciscana ribosomal prot... 186 2e-46
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica... 186 2e-46
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM... 186 4e-46
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei... 185 6e-46
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM... 184 8e-46
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM... 184 8e-46
protein update 2009. 6. 2
PSORT

psg: 0.73 gvh: 0.31 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.07
nuc: 0.09 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
24.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall

>> prediction for SLC849 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC849Z
3' end seq.
>SLC849Z.Seq
----------CCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGA
GCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGT
CAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACT
GAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTC
TTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGT
ATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACC
TCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGC
GTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTTCAGAGAGTTATC
AAACATAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 501
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -