SLC844
Library SL
(Link to library)
Clone ID SLC844
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15133-1
Original site URL
Representative seq. ID SLC844Z
(Link to Original site)
Representative DNA sequence
>SLC844 (SLC844Q) /CSM/SL/SLC8-B/SLC844Q.Seq.d/
XXXXXXXXXXAATCATCATCCGTGCTTCAAAGACCCAAGCTGTTGTTGGTCCAAACGCTC
GTCGTATCCAAGAACTCTGCTCTTTAGTCCAAAAGAGATTCAACTTCAAAGAAGGTACCG
TCGTTCTCTTTGCTGAAAAAATCTTAAACAGAGGTTTATGTGCCGTCGCTCAAGCTGAAT
CACTCAAACTCAAATTATTAGCTGGTCTCCCAGTTCGTAAAGCTTGTTACGCCATCGTTC
ACCAAATCATGACCCGTGGTGCTAAAGGTTGTGAAGTTATCGTTTCAGGTAAATTAAGAG
CCCAAAGAGCCAAATCAATGAAATTCAGAGACGGTTACATGATCAAATCTGGTCAACCAT
CAAAAGATTTCATCGATTTCGCCTGTCGTCACGTCTTATTAAGACAAGGTACCCTCGGTG
TCAAAGTCGCCATTATGTTACCATACGACGAAACCCGTAAAATCCACGGTGCTTGCAACA
TCCCACAACCAGACGTTGTTGTCATTCGTGATGCTTAAATTTATTAATAAAATTCAATTT
TTTTAATAATTTAAAAAAAAAAAAAAAAAA
sequence update 1998. 5.16
Translated Amino Acid sequence
---IIIRASKTQAVVGPNARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAES
LKLKLLAGLPVRKACYAIVHQIMTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPS
KDFIDFACRHVLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVVVIRDA*iy**nsif
lii*kkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---IIIRASKTQAVVGPNARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAES
LKLKLLAGLPVRKACYAIVHQIMTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPS
KDFIDFACRHVLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVVVIRDA*iy**nsif
lii*kkkkk


Frame B:
---sssvlqrpklllvqtlvvsknsal*skrdstskkvpsfsllkks*tevyvpslklnh
snsny*lvsqfvklvtpsftks*pvvlkvvklsfqvn*epkepnq*nsetvt*snlvnhq
kissispvvtsy*dkvpsvsksplcyhttkpvkstvlatshnqtllsfvmlkfinkiqff
**fkkkkkk


Frame C:
---hhpcfkdpsccwskrssyprtllfspkeiqlqrryrrslc*knlkqrfmcrrss*it
qtqiiswspss*sllrhrspnhdpwc*rl*syrfr*ikspksqineiqrrlhdqiwstik
rfhrfrlssrliktryprcqsrhyvtirrnp*nprclqhpttrrcchs*clnllikfnff
nnlkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE880 (VSE880Q) /CSM/VS/VSE8-D/VSE880Q.Seq.d/ 1045 0.0
VSD711 (VSD711Q) /CSM/VS/VSD7-A/VSD711Q.Seq.d/ 1045 0.0
VSD464 (VSD464Q) /CSM/VS/VSD4-C/VSD464Q.Seq.d/ 1045 0.0
VSC233 (VSC233Q) /CSM/VS/VSC2-B/VSC233Q.Seq.d/ 1045 0.0
VSB209 (VSB209Q) /CSM/VS/VSB2-A/VSB209Q.Seq.d/ 1045 0.0
VSA309 (VSA309Q) /CSM/VS/VSA3-A/VSA309Q.Seq.d/ 1045 0.0
SLC844 (SLC844Q) /CSM/SL/SLC8-B/SLC844Q.Seq.d/ 1045 0.0
SLB674 (SLB674Q) /CSM/SL/SLB6-D/SLB674Q.Seq.d/ 1045 0.0
FC-BD04 (FC-BD04Q) /CSM/FC/FC-BD/FC-BD04Q.Seq.d/ 1045 0.0
FC-BC07 (FC-BC07Q) /CSM/FC/FC-BC/FC-BC07Q.Seq.d/ 1045 0.0

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU284562) Dictyostelium discoideum gamete cDNA clone:FC-BD0... 1074 0.0 1
(AU284547) Dictyostelium discoideum gamete cDNA clone:FC-BC0... 1074 0.0 1
(AU284465) Dictyostelium discoideum gamete cDNA clone:FC-AX1... 1074 0.0 1
(AU284437) Dictyostelium discoideum gamete cDNA clone:FC-AV1... 1074 0.0 1
(AU284330) Dictyostelium discoideum gamete cDNA clone:FC-AM0... 1074 0.0 1
(AU264443) Dictyostelium discoideum vegetative cDNA clone:VS... 1074 0.0 1
(AU263452) Dictyostelium discoideum vegetative cDNA clone:VS... 1074 0.0 1
(AU262417) Dictyostelium discoideum vegetative cDNA clone:VS... 1074 0.0 1
(AU261890) Dictyostelium discoideum vegetative cDNA clone:VS... 1074 0.0 1
(AU261411) Dictyostelium discoideum vegetative cDNA clone:VS... 1074 0.0 1
dna update 2009. 3. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P90526) RecName: Full=40S ribosomal protein S3; &U78756_1(U787... 332 5e-90
EF084684_1(EF084684|pid:none) Picea sitchensis clone WS02725_K04... 212 5e-54
FB901915_1(FB901915|pid:none) Sequence 121188 from Patent WO2008... 212 6e-54
FB901921_1(FB901921|pid:none) Sequence 121194 from Patent WO2008... 212 6e-54
EF083819_1(EF083819|pid:none) Picea sitchensis clone WS02713_L17... 211 1e-53
FB901931_1(FB901931|pid:none) Sequence 121204 from Patent WO2008... 210 2e-53
EU966055_1(EU966055|pid:none) Zea mays clone 291258 40S ribosoma... 208 7e-53
EF145351_1(EF145351|pid:none) Populus trichocarpa clone WS01123_... 208 9e-53
EF147966_1(EF147966|pid:none) Populus trichocarpa clone WS0126_F... 208 9e-53
(Q9FJA6) RecName: Full=40S ribosomal protein S3-3; &AB015477_14... 208 9e-53
protein update 2009. 6. 2
PSORT

psg: 0.76 gvh: 0.56 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.42 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: mitochondrial
20.0 %: cytoplasmic
20.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SLC844 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC844Z
3' end seq.
>SLC844Z.Seq
----------AATCATCATCCGTGCTTCAAAGACCCAAGCTGTTGTTGGTCCAAACGCTC
GTCGTATCCAAGAACTCTGCTCTTTAGTCCAAAAGAGATTCAACTTCAAAGAAGGTACCG
TCGTTCTCTTTGCTGAAAAAATCTTAAACAGAGGTTTATGTGCCGTCGCTCAAGCTGAAT
CACTCAAACTCAAATTATTAGCTGGTCTCCCAGTTCGTAAAGCTTGTTACGCCATCGTTC
ACCAAATCATGACCCGTGGTGCTAAAGGTTGTGAAGTTATCGTTTCAGGTAAATTAAGAG
CCCAAAGAGCCAAATCAATGAAATTCAGAGACGGTTACATGATCAAATCTGGTCAACCAT
CAAAAGATTTCATCGATTTCGCCTGTCGTCACGTCTTATTAAGACAAGGTACCCTCGGTG
TCAAAGTCGCCATTATGTTACCATACGACGAAACCCGTAAAATCCACGGTGCTTGCAACA
TCCCACAACCAGACGTTGTTGTCATTCGTGATGCTTAAATTTATTAATAAAATTCAATTT
TTTTAATAATTTAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 560
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -