SLC836
Library SL
(Link to library)
Clone ID SLC836
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15434-1
Original site URL
Representative seq. ID SLC836Z
(Link to Original site)
Representative DNA sequence
>SLC836 (SLC836Q) /CSM/SL/SLC8-B/SLC836Q.Seq.d/
XXXXXXXXXXGTTACCAAATCGTCACCATGGAAACCGCCGCTCCATTATCAAACATTTTC
GTCACCACCACCGGTTGTCGTGATATCGTCAGAGGTGAACACTTTGCCGTCATGAAAGAA
GATGCCATCGTTTGTAACATTGGTCACTTTGATTGTGAAATCGATGTCGCTTGGTTAAAC
GCCAACGCCAAAAAAGATACCGTCAAACCACAAGTTGACCGTTACACCCTTGCCAACGGT
GTCCACATCATCCTCTTAGCTGAAGGTCGTCTCGTCAATTTAGGTTGTGGTACTGGTCAT
CCATCTTTTGTTATGTCAAACTCTTTCTGTAACCAAACTTTAGCTCAAATCGCCCTCTGG
ACTAAAACTGAAGAATACCCATTAGGTGTCCACTTCTTACCAAAGATTTTAGATGAAGAA
GTTGCTCGTTTACATTTAGATCAATTAGGTGCTAAATTAACTACCCTCACTGAAAAACAA
ACCGAATATTTATCAGTTCCAGTCGCTGGTCCATACAAAGTTGATCACTACAGATATTAA
AATCTTTTGTTTAATAAATATATAAAACTTTTTTAAC
sequence update 1998. 5.16
Translated Amino Acid sequence
---YQIVTMETAAPLSNIFVTTTGCRDIVRGEHFAVMKEDAIVCNIGHFDCEIDVAWLNA
NAKKDTVKPQVDRYTLANGVHIILLAEGRLVNLGCGTGHPSFVMSNSFCNQTLAQIALWT
KTEEYPLGVHFLPKILDEEVARLHLDQLGAKLTTLTEKQTEYLSVPVAGPYKVDHYRY*n
llfnkyiklf*


Translated Amino Acid sequence (All Frames)
Frame A:
---lpnrhhgnrrsiikhfrhhhrls*yrqr*tlcrherrchrl*hwsl*l*nrcrlvkr
qrqkryrqtts*plhpcqrcphhpls*rssrqfrlwywssifcyvklfl*pnfssnrpld
*n*ripircplltkdfr*rscsftfrsirc*inyph*ktnrifisssrwsiqs*slqilk
sfv**iyktfl


Frame B:
---YQIVTMETAAPLSNIFVTTTGCRDIVRGEHFAVMKEDAIVCNIGHFDCEIDVAWLNA
NAKKDTVKPQVDRYTLANGVHIILLAEGRLVNLGCGTGHPSFVMSNSFCNQTLAQIALWT
KTEEYPLGVHFLPKILDEEVARLHLDQLGAKLTTLTEKQTEYLSVPVAGPYKVDHYRY*n
llfnkyiklf*


Frame C:
---tksspwkpplhyqtfsspppvvvissevntlps*kkmpsfvtlvtlivksmslg*tp
tpkkipsnhkltvtplptvstsss*lkvvssi*vvvlvihlllcqtlsvtkl*lkspsgl
klknth*vstsyqrf*mkkllvyi*in*vln*lpslknkpniyqfqslvhtklittdiki
fclini*nffn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC836 (SLC836Q) /CSM/SL/SLC8-B/SLC836Q.Seq.d/ 1124 0.0
VSE832 (VSE832Q) /CSM/VS/VSE8-B/VSE832Q.Seq.d/ 1116 0.0
SLI320 (SLI320Q) /CSM/SL/SLI3-A/SLI320Q.Seq.d/ 1116 0.0
SLH831 (SLH831Q) /CSM/SL/SLH8-B/SLH831Q.Seq.d/ 1116 0.0
SLH617 (SLH617Q) /CSM/SL/SLH6-A/SLH617Q.Seq.d/ 1116 0.0
SLH447 (SLH447Q) /CSM/SL/SLH4-B/SLH447Q.Seq.d/ 1116 0.0
SLG713 (SLG713Q) /CSM/SL/SLG7-A/SLG713Q.Seq.d/ 1116 0.0
SLG240 (SLG240Q) /CSM/SL/SLG2-B/SLG240Q.Seq.d/ 1116 0.0
SLG194 (SLG194Q) /CSM/SL/SLG1-D/SLG194Q.Seq.d/ 1116 0.0
SLF201 (SLF201Q) /CSM/SL/SLF2-A/SLF201Q.Seq.d/ 1116 0.0

own update 2000. 9. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034409) Dictyostelium discoideum slug cDNA, clone SLC836. 1122 0.0 1
(AU284941) Dictyostelium discoideum gamete cDNA clone:FC-BQ1... 1114 0.0 1
(AU263412) Dictyostelium discoideum vegetative cDNA clone:VS... 1114 0.0 1
(AU053288) Dictyostelium discoideum slug cDNA, clone SLI320. 1114 0.0 1
(AU052844) Dictyostelium discoideum slug cDNA, clone SLF201. 1114 0.0 1
(AU052246) Dictyostelium discoideum slug cDNA, clone SLA418. 1114 0.0 1
(AU052210) Dictyostelium discoideum slug cDNA, clone SLA247. 1114 0.0 1
(AU052149) Dictyostelium discoideum slug cDNA, clone SLA121. 1114 0.0 1
(AU040015) Dictyostelium discoideum slug cDNA, clone SLH447. 1114 0.0 1
(AU039905) Dictyostelium discoideum slug cDNA, clone SLG713. 1114 0.0 1
dna update 2009. 3. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27655(A27655;S06394) adenosylhomocysteinase (EC 3.3.1.1) - slim... 357 9e-98
X12523_1(X12523|pid:none) D. discoideum mRNA fragment for S-aden... 312 7e-89
(P27604) RecName: Full=Adenosylhomocysteinase; Short=Ad... 270 3e-71
(O13639) RecName: Full=Adenosylhomocysteinase; Short=Ad... 266 3e-70
AY278950_1(AY278950|pid:none) Branchiostoma belcheri tsingtaunes... 265 6e-70
DQ167408_1(DQ167408|pid:none) Volvariella volvacea S-adenosyl-L-... 262 4e-69
DQ676850_1(DQ676850|pid:none) Pimephales promelas S-adenosylhomo... 257 2e-67
BC135905_1(BC135905|pid:none) Xenopus tropicalis S-adenosylhomoc... 256 4e-67
(Q27580) RecName: Full=Adenosylhomocysteinase; Short=Ad... 255 5e-67
DQ440384_1(DQ440384|pid:none) Aedes aegypti clone AET-5159 S-ade... 255 7e-67
protein update 2009. 6. 2
PSORT

psg: 0.75 gvh: 0.45 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.12 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for SLC836 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC836Z
3' end seq.
>SLC836Z.Seq
----------GTTACCAAATCGTCACCATGGAAACCGCCGCTCCATTATCAAACATTTTC
GTCACCACCACCGGTTGTCGTGATATCGTCAGAGGTGAACACTTTGCCGTCATGAAAGAA
GATGCCATCGTTTGTAACATTGGTCACTTTGATTGTGAAATCGATGTCGCTTGGTTAAAC
GCCAACGCCAAAAAAGATACCGTCAAACCACAAGTTGACCGTTACACCCTTGCCAACGGT
GTCCACATCATCCTCTTAGCTGAAGGTCGTCTCGTCAATTTAGGTTGTGGTACTGGTCAT
CCATCTTTTGTTATGTCAAACTCTTTCTGTAACCAAACTTTAGCTCAAATCGCCCTCTGG
ACTAAAACTGAAGAATACCCATTAGGTGTCCACTTCTTACCAAAGATTTTAGATGAAGAA
GTTGCTCGTTTACATTTAGATCAATTAGGTGCTAAATTAACTACCCTCACTGAAAAACAA
ACCGAATATTTATCAGTTCCAGTCGCTGGTCCATACAAAGTTGATCACTACAGATATTAA
AATCTTTTGTTTAATAAATATATAAAACTTTTTTAAC
Length of 3' end seq. 567
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -