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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC832
Library SL
(Link to library)
Clone ID SLC832
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID SLC832Z
(Link to Original site)
Representative DNA sequence 
>SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/
XXXXXXXXXXACCTCTTGCAATATCAATCACCAGTTAGAGTAGCCAGCTCAACATCATCT
GAGAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATTCTCATACCTCTGAAGAG
AAAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACT
GCTACCTCACCAAGCACTACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTG
ACTCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTC
AATCAAAGTCATAGCAATCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTT
CTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTC
ATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCA
ACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAAT
GAATTAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTGATGAAATTCAAGTACTC
TTAGGTTTATTATATTTAGCTGTTGTTGCTAATTAGAGAAAAAAAAAA
sequence update 1998. 5.16
Translated Amino Acid sequence 
---LLQYQSPVRVASSTSSENLVDSASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTA
TSPSTTSPPVSSTTPVAPVTPTEQSVPQSPFSTGAAVSVNQSHSNLPIATTQQFLDRIVL
SAKSVKQIIQKKTSNRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNE
LVKDTAHENNKIFDEIQVLLGLLYLAVVAN*rkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---plaisits*ssqlnii*efsr*cfhyeqr*fsyl*reneargkeirkmgfkd*ltnc
yltkhylttsl*yhsgctsdsnrticttisilnwccrlcqsks*qspnryyptip*syrs
lc*ir*tnhskenl*s*ychlyshgfskgicklwydslfnypnvfrylskcw*trwccq*
is*rhcsrk**nl**nsstlrfiifsccc*lekkk


Frame B:
---LLQYQSPVRVASSTSSENLVDSASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTA
TSPSTTSPPVSSTTPVAPVTPTEQSVPQSPFSTGAAVSVNQSHSNLPIATTQQFLDRIVL
SAKSVKQIIQKKTSNRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNE
LVKDTAHENNKIFDEIQVLLGLLYLAVVAN*rkkk


Frame C:
---scninhqle*paqhhlri*sivlpl*ttliliplkrk*skrqrd*kdgv*rlthqll
phqalphhqslvplrlhq*lqpnnlyhnlhsqlvlpslsikviaisqsllpnnslivsfs
llnplnksfkrkplivilsslfswi**rnlqtlv*lslqlpqclsislkmlvnslvlsmn
*lktlltkiikslmkfkys*vyyi*llllirekk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                       1245   0.0
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                       1245   0.0
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/                       1245   0.0
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/                       1237   0.0
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/                       1164   0.0
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/                       1126   0.0
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                       1114   0.0
AFF249 (AFF249Q) /CSM/AF/AFF2-C/AFF249Q.Seq.d/                       1102   0.0
SLI758 (SLI758Q) /CSM/SL/SLI7-C/SLI758Q.Seq.d/                       1051   0.0
CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/                       1009   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034407) Dictyostelium discoideum slug cDNA, clone SLC832.     1245   0.0    1
(C84047) Dictyostelium discoideum slug cDNA, clone SSC538.       1245   0.0    1
(C84045) Dictyostelium discoideum slug cDNA, clone SSC534.       1245   0.0    1
(AF222688) Dictyostelium discoideum dynacortin (dct) mRNA, c...  1243   0.0    1
(AU060182) Dictyostelium discoideum slug cDNA, clone SLA529.     1237   0.0    1
(BJ399351) Dictyostelium discoideum cDNA clone:dds5g18, 3' e...  1132   0.0    2
(BJ373316) Dictyostelium discoideum cDNA clone:ddc2p18, 3' e...  1126   0.0    1
(BJ400628) Dictyostelium discoideum cDNA clone:dds14h01, 3' ...  1112   0.0    1
(BJ340061) Dictyostelium discoideum cDNA clone:dda11a14, 3' ...  1102   0.0    1
(AU053491) Dictyostelium discoideum slug cDNA, clone SLI758.     1051   0.0    1
dna update 2009. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   311   1e-83
CP000090_1303(CP000090|pid:none) Ralstonia eutropha JMP134 chrom...    37   0.63
FM992688_1247(FM992688|pid:none) Candida dubliniensis CD36 chrom...    35   2.4
EU565733_1(EU565733|pid:none) Uncultured soil bacterium clone gl...    35   2.4
CP000010_2763(CP000010|pid:none) Burkholderia mallei ATCC 23344 ...    34   3.1
CP000526_104(CP000526|pid:none) Burkholderia mallei SAVP1 chromo...    34   3.1
CP000151_2972(CP000151|pid:none) Burkholderia sp. 383 chromosome...    34   4.1
AP009385_2728(AP009385|pid:none) Burkholderia multivorans ATCC 1...    33   5.3
AM260479_1383(AM260479|pid:none) Ralstonia eutropha H16 chromoso...    33   5.3
CU633749_1281(CU633749|pid:none) Cupriavidus taiwanensis str. LM...    33   5.3
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.30  top: 0.63  tms: 0.07  mit: 0.36  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SLC832 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC832Z
3' end seq. 
>SLC832Z.Seq
----------ACCTCTTGCAATATCAATCACCAGTTAGAGTAGCCAGCTCAACATCATCT
GAGAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATTCTCATACCTCTGAAGAG
AAAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACT
GCTACCTCACCAAGCACTACCTCACCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTG
ACTCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTC
AATCAAAGTCATAGCAATCTCCCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTT
CTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTC
ATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCA
ACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAAT
GAATTAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTGATGAAATTCAAGTACTC
TTAGGTTTATTATATTTAGCTGTTGTTGCTAATTAGAGAAAAAAAAAA
Length of 3' end seq. 638
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -