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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC823
Library SL
(Link to library)
Clone ID SLC823
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09872-1
Original site URL
Representative seq. ID SLC823Z
(Link to Original site)
Representative DNA sequence 
>SLC823 (SLC823Q) /CSM/SL/SLC8-A/SLC823Q.Seq.d/
XXXXXXXXXXTATATATATATTTATTTATTTATTTATTTATTTAATCAATAAATTAAAAT
TCGAATTTATTATTTATTGAACAATTCATTTATTATTTATTCTTTGTGTNGATAAATATA
TATATATATATATATACACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 5.14
Translated Amino Acid sequence 
---yiylfiylfi*sin*NSNLLFIEQFIYYLFFVXINIYIYIYTHKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
---iyifiylfiylinklkfefiiy*tihllfilcvdkyiyiyiytqkkkkkkkkkkk


Frame B:
---yiylfiylfi*sin*NSNLLFIEQFIYYLFFVXINIYIYIYTHKKKKKKKKKKKK


Frame C:
---iyiylfiylfnq*ikiriyyllnnsfiiyslcx*iyiyiyihtkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC823 (SLC823Q) /CSM/SL/SLC8-A/SLC823Q.Seq.d/                         34   0.65
own update 2004.12.25
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Length of query: 178
Length of database: 98,766,808,389
Length adjustment: 22
Effective length of query: 156
Effective length of database: 96,605,827,083
Effective search space: 15070509024948
Effective search space used: 15070509024948
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)








Dictyostelium discoideum cDNA Project Home
dna update 2009. 3. 9
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.296    0.105    0.299

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 86,983,694
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.30  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.63  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for SLC823 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC823Z
3' end seq. 
>SLC823Z.Seq
----------TATATATATATTTATTTATTTATTTATTTATTTAATCAATAAATTAAAAT
TCGAATTTATTATTTATTGAACAATTCATTTATTATTTATTCTTTGTGTNGATAAATATA
TATATATATATATATACACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 168
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -