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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC807
Library SL
(Link to library)
Clone ID SLC807
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15847-1
Original site URL
Representative seq. ID SLC807P
(Link to Original site)
Representative DNA sequence 
>SLC807 (SLC807Q) /CSM/SL/SLC8-A/SLC807Q.Seq.d/
GAAAAGTATTTCTTTCACAAAAAACAAGAAAGATTGATTGGAGATATTCTCAATTAAAAG
CAATTAAAAAGATGATGTCAGAGAATAAAGATAATATTACAGCAGCCGTCAAGAAGGATC
TTGGTAAACATGAATTTGAAATCCATCAAACTGAAATCGTAATGATTCAAACTGAATTAG
ATGAAACCATCTCTCATTTAGAATCTTGGAATAAAACTGAAAAAGTTTATAGTCCACTTC
ATTTCAAACCAGCTTCATCTTATATATTAAAAGAACCATTAGGTGTTGTTTTAATTATGT
CACCATGGAATTATCCAGTTAATTTAGCATTAATACCATTAATTGGTGCAATTGCAGGTG
GTAATTGTGCTTTATTAAAATTATCAAGACATTCATATAATATTAGTAAACTTTTACATG
GATTATTAACAAAATATTTGGATCCAGAATGTTTTGAATTTGATTGTGAAGGTGGTGCAC
CATATATTACAGAGTTATTGGAGTATAAATGGGATCATATATTTTTCACAGGATCAGTAA
AGGTTGGTAAGATTGTTTATCAAGCAGCAGCAAAATTCTTXXXXXXXXXXTTGCACGTAT
CATTAGCAGTGCCGCCGCTGAACGTTTACAACAATTGTTCTCAATGGGTAAGGTTGTAAT
TGGTGGCGAGGCCGATATCGCCGAGAGATACATTGCTCCAACTGTTATCGTTGACCCAGA
TTTAGATTCGCCATTGATGCAAGATGAGATCTTTGGTCCAGTCCTCCCAATTGTCACCTA
TGAGAATATCGATGAATGTTTGGAATTTATTCAAAATCGTCCACATGCTTTGACTCTTTA
TTTATTCTCTCGTGATCAAGCCATTCAAGATAAGGTTTTTGATGGTACTCAATCCGGTTC
TCTCATGATCAATGATACCCTCTTACATTTCACAAATCCAAATTTACCATTTGGTGGTAT
TGGTGATAGTGGTATTGGTTCATATCATGGTAAAGGTACATTTGATATCTTTGTTCATAA
AAGAGGACTTGTTCAATCAACTACTAAAAAATTCTTAGACCTTGACACTTCGTTATCCAC
CATATACTCCATTCTCTGATAATGTAGCTGGTAAAATTTTAGGTTCTGGTTGGTAAAAAA
TTAAA
sequence update 1999. 1.14
Translated Amino Acid sequence 
KVFLSQKTRKIDWRYSQLKAIKKMMSENKDNITAAVKKDLGKHEFEIHQTEIVMIQTELD
ETISHLESWNKTEKVYSPLHFKPASSYILKEPLGVVLIMSPWNYPVNLALIPLIGAIAGG
NCALLKLSRHSYNISKLLHGLLTKYLDPECFEFDCEGGAPYITELLEYKWDHIFFTGSVK
VGKIVYQAAAKF---

---ARIISSAAAERLQQLFSMGKVVIGGEADIAERYIAPTVIVDPDLDSPLMQDEIFGPV
LPIVTYENIDECLEFIQNRPHALTLYLFSRDQAIQDKVFDGTQSGSLMINDTLLHFTNPN
LPFGGIGDSGIGSYHGKGTFDIFVHKRGLVQSTTKKFLDLDTSLSTIYSIL**csw*nfr
fwlvkn*
Translated Amino Acid sequence (All Frames) 
Frame A:
ekyffhkkqerligdiln*kqlkr*cqrikiilqqpsrrilvnmnlksiklks**fkln*
mkpsli*nlgiklkkfivhfisnqlhliy*knh*vlf*lchhgiiqli*h*yh*lvqlqv
vivly*nyqdihiilvnfymdy*qniwiqnvlnlivkvvhhilqsywsingiiyfsqdq*
rlvrlfikqqqns---

---lhvslavpplnvynncsqwvrl*lvarpisprdtllqllsltqi*irh*ckmrslvq
ssqlspmrismnvwnlfkivhml*lfiyslvikpfkirflmvlnpvls*smipsyisqiq
iyhlvvlvivvlvhimvkvhlislfikedlfnqllkns*tltlryppytpfsdnvagkil
gsgw*kik

Frame B:
ksisftknkkd*leifsiksn*kddvre*r*yyssrqegsw*t*i*npsn*nrndsn*ir
*nhlsfrile*n*ksl*stsfqtsfilyikrtirccfnyvtmelss*fsintinwcncrw
*lcfikiiktfi*y**tftwiinkifgsrmf*i*l*rwctiyyrvigv*mgsyifhrisk
gw*dclsssskil---

---ctyh*qcrr*tfttivlng*gcnwwrgryrreihcsncyr*prfrfaidar*dlwss
ppnchl*eyr*mfgiysksstcfdslfils*sshsr*gf*wysirfshdq*ypltfhksk
ftiwwyw**wywfisw*ryi*ylcs*krtcsiny*kilrp*hfvihhilhslim*lvkf*
vlvgkkl

Frame C:
KVFLSQKTRKIDWRYSQLKAIKKMMSENKDNITAAVKKDLGKHEFEIHQTEIVMIQTELD
ETISHLESWNKTEKVYSPLHFKPASSYILKEPLGVVLIMSPWNYPVNLALIPLIGAIAGG
NCALLKLSRHSYNISKLLHGLLTKYLDPECFEFDCEGGAPYITELLEYKWDHIFFTGSVK
VGKIVYQAAAKF---

---ARIISSAAAERLQQLFSMGKVVIGGEADIAERYIAPTVIVDPDLDSPLMQDEIFGPV
LPIVTYENIDECLEFIQNRPHALTLYLFSRDQAIQDKVFDGTQSGSLMINDTLLHFTNPN
LPFGGIGDSGIGSYHGKGTFDIFVHKRGLVQSTTKKFLDLDTSLSTIYSIL**csw*nfr
fwlvkn*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC807 (SLC807Q) /CSM/SL/SLC8-A/SLC807Q.Seq.d/                       2210   0.0
VSE551 (VSE551Q) /CSM/VS/VSE5-C/VSE551Q.Seq.d/                       1065   0.0
VSE357 (VSE357Q) /CSM/VS/VSE3-C/VSE357Q.Seq.d/                       1061   0.0
VSC524 (VSC524Q) /CSM/VS/VSC5-A/VSC524Q.Seq.d/                       1053   0.0
VFF516 (VFF516Q) /CSM/VF/VFF5-A/VFF516Q.Seq.d/                        880   0.0
SFD695 (SFD695Q) /CSM/SF/SFD6-D/SFD695Q.Seq.d/                        728   0.0
CFG873 (CFG873Q) /CSM/CF/CFG8-D/CFG873Q.Seq.d/                        696   0.0
SFI530 (SFI530Q) /CSM/SF/SFI5-B/SFI530Q.Seq.d/                        557   e-157
CHC478 (CHC478Q) /CSM/CH/CHC4-D/CHC478Q.Seq.d/                        545   e-154
SFA214 (SFA214Q) /CSM/SF/SFA2-A/SFA214Q.Seq.d/                        432   e-120
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061069) Dictyostelium discoideum slug cDNA, clone SLC807.     1150   0.0    1
(AU034391) Dictyostelium discoideum slug cDNA, clone SLC807.     1100   0.0    1
(AU263192) Dictyostelium discoideum vegetative cDNA clone:VS...   930   0.0    2
(AU263047) Dictyostelium discoideum vegetative cDNA clone:VS...   922   0.0    2
(AU262621) Dictyostelium discoideum vegetative cDNA clone:VS...   914   0.0    2
(BJ428503) Dictyostelium discoideum cDNA clone:ddv12o03, 3' ...   880   0.0    1
(BJ400135) Dictyostelium discoideum cDNA clone:dds8m24, 3' e...   728   0.0    1
(BJ372883) Dictyostelium discoideum cDNA clone:ddc14b20, 3' ...   696   0.0    1
(BJ402825) Dictyostelium discoideum cDNA clone:dds18k07, 3' ...   557   e-154  1
(BJ378048) Dictyostelium discoideum cDNA clone:ddc26l20, 3' ...   545   e-150  1
dna update 2009. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000806_2676(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   166   1e-39
(Q1JPA0) RecName: Full=Aldehyde dehydrogenase family 3 member B1...   165   3e-39
BC147958_1(BC147958|pid:none) Bos taurus aldehyde dehydrogenase ...   164   4e-39
AK154723_1(AK154723|pid:none) Mus musculus NOD-derived CD11c +ve...   162   2e-38
(Q80VQ0) RecName: Full=Aldehyde dehydrogenase family 3 member B1...   162   2e-38
AF362571_1(AF362571|pid:none) Mus musculus aldehyde dehydrogenas...   160   6e-38
(Q5XI42) RecName: Full=Aldehyde dehydrogenase family 3 member B1...   160   8e-38
CP001336_2145(CP001336|pid:none) Desulfitobacterium hafniense DC...   159   1e-37
BC002553_1(BC002553|pid:none) Homo sapiens aldehyde dehydrogenas...   159   2e-37
(P43353) RecName: Full=Aldehyde dehydrogenase family 3 member B1...   159   2e-37
protein update 2009. 6. 2
PSORT 

 psg: 0.57  gvh: 0.18  alm: 0.31  top: 0.70  tms: 0.07  mit: 0.32  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.10  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 56.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLC807 is nuc
5' end seq. ID SLC807F
5' end seq. 
>SLC807F.Seq
GAAAAGTATTTCTTTCACAAAAAACAAGAAAGATTGATTGGAGATATTCTCAATTAAAAG
CAATTAAAAAGATGATGTCAGAGAATAAAGATAATATTACAGCAGCCGTCAAGAAGGATC
TTGGTAAACATGAATTTGAAATCCATCAAACTGAAATCGTAATGATTCAAACTGAATTAG
ATGAAACCATCTCTCATTTAGAATCTTGGAATAAAACTGAAAAAGTTTATAGTCCACTTC
ATTTCAAACCAGCTTCATCTTATATATTAAAAGAACCATTAGGTGTTGTTTTAATTATGT
CACCATGGAATTATCCAGTTAATTTAGCATTAATACCATTAATTGGTGCAATTGCAGGTG
GTAATTGTGCTTTATTAAAATTATCAAGACATTCATATAATATTAGTAAACTTTTACATG
GATTATTAACAAAATATTTGGATCCAGAATGTTTTGAATTTGATTGTGAAGGTGGTGCAC
CATATATTACAGAGTTATTGGAGTATAAATGGGATCATATATTTTTCACAGGATCAGTAA
AGGTTGGTAAGATTGTTTATCAAGCAGCAGCAAAATTCTT----------
Length of 5' end seq. 580
3' end seq. ID SLC807Z
3' end seq. 
>SLC807Z.Seq
----------TTGCACGTATCATTAGCAGTGCCGCCGCTGAACGTTTACAACAATTGTTC
TCAATGGGTAAGGTTGTAATTGGTGGCGAGGCCGATATCGCCGAGAGATACATTGCTCCA
ACTGTTATCGTTGACCCAGATTTAGATTCGCCATTGATGCAAGATGAGATCTTTGGTCCA
GTCCTCCCAATTGTCACCTATGAGAATATCGATGAATGTTTGGAATTTATTCAAAATCGT
CCACATGCTTTGACTCTTTATTTATTCTCTCGTGATCAAGCCATTCAAGATAAGGTTTTT
GATGGTACTCAATCCGGTTCTCTCATGATCAATGATACCCTCTTACATTTCACAAATCCA
AATTTACCATTTGGTGGTATTGGTGATAGTGGTATTGGTTCATATCATGGTAAAGGTACA
TTTGATATCTTTGTTCATAAAAGAGGACTTGTTCAATCAACTACTAAAAAATTCTTAGAC
CTTGACACTTCGTTATCCACCATATACTCCATTCTCTGATAATGTAGCTGGTAAAATTTT
AGGTTCTGGTTGGTAAAAAATTAAA
Length of 3' end seq. 555
Connected seq. ID SLC807P
Connected seq. 
>SLC807P.Seq
GAAAAGTATTTCTTTCACAAAAAACAAGAAAGATTGATTGGAGATATTCTCAATTAAAAG
CAATTAAAAAGATGATGTCAGAGAATAAAGATAATATTACAGCAGCCGTCAAGAAGGATC
TTGGTAAACATGAATTTGAAATCCATCAAACTGAAATCGTAATGATTCAAACTGAATTAG
ATGAAACCATCTCTCATTTAGAATCTTGGAATAAAACTGAAAAAGTTTATAGTCCACTTC
ATTTCAAACCAGCTTCATCTTATATATTAAAAGAACCATTAGGTGTTGTTTTAATTATGT
CACCATGGAATTATCCAGTTAATTTAGCATTAATACCATTAATTGGTGCAATTGCAGGTG
GTAATTGTGCTTTATTAAAATTATCAAGACATTCATATAATATTAGTAAACTTTTACATG
GATTATTAACAAAATATTTGGATCCAGAATGTTTTGAATTTGATTGTGAAGGTGGTGCAC
CATATATTACAGAGTTATTGGAGTATAAATGGGATCATATATTTTTCACAGGATCAGTAA
AGGTTGGTAAGATTGTTTATCAAGCAGCAGCAAAATTCTT----------TTGCACGTAT
CATTAGCAGTGCCGCCGCTGAACGTTTACAACAATTGTTCTCAATGGGTAAGGTTGTAAT
TGGTGGCGAGGCCGATATCGCCGAGAGATACATTGCTCCAACTGTTATCGTTGACCCAGA
TTTAGATTCGCCATTGATGCAAGATGAGATCTTTGGTCCAGTCCTCCCAATTGTCACCTA
TGAGAATATCGATGAATGTTTGGAATTTATTCAAAATCGTCCACATGCTTTGACTCTTTA
TTTATTCTCTCGTGATCAAGCCATTCAAGATAAGGTTTTTGATGGTACTCAATCCGGTTC
TCTCATGATCAATGATACCCTCTTACATTTCACAAATCCAAATTTACCATTTGGTGGTAT
TGGTGATAGTGGTATTGGTTCATATCATGGTAAAGGTACATTTGATATCTTTGTTCATAA
AAGAGGACTTGTTCAATCAACTACTAAAAAATTCTTAGACCTTGACACTTCGTTATCCAC
CATATACTCCATTCTCTGATAATGTAGCTGGTAAAATTTTAGGTTCTGGTTGGTAAAAAA
TTAAA
Length of connected seq. 1135
Full length Seq ID -
Full length Seq. -
Length of full length seq. -