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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC805
Library SL
(Link to library)
Clone ID SLC805
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01187-1|Contig-U10933-1
Original site URL
Representative seq. ID SLC805P
(Link to Original site)
Representative DNA sequence 
>SLC805 (SLC805Q) /CSM/SL/SLC8-A/SLC805Q.Seq.d/
ACAAAGATGAATGGNGTATATTTCACACATCTAGAAAGATGTAGTTTATCTTCCATACCA
CACAAAAAGAAAATTGATTTTACTTTACAAACTGGATCTTCAAAATTTGGTGGTCTACGT
GGAGCATTTGCAATTTGTTCCGATACTTCAACTTTTGAAGATCCAGTTTGTAAAGTAAAA
TCAATTTTCTTTTTGTGTGGTATGGAAGATAAACTACATCTTTCTAGATGTGTGAAATAT
ACTCCATACAAAGATGAATGGTCCTTCATGCCACCCACAAAACATAAGCGTGCATGTGTT
GCGGATGCTGGTGTATTGGCAAATGGTATAATCTATATTTTTGGTGGAAATGATAGTTTA
GAAACNNNNCGAAAAGTTTAATATACATACAAATAAATGGGAAAATGGAGGCAGTATTCC
CAATGGTGGAGGTTCTTCAATGTCGGCAACCTATGACAAGAAAAACAATTGCATCTATTT
AATTGGTGGTGTTAAATTTAXXXXXXXXXXTTTAAATTTTTAATTTTTTTTTTTATTCAC
AACAAACGAACAATTTTGTTTTGTTAGTGTTTTTAGTAAAAAAAAAAAAAAAAAAAAAAA
AAAATTATTACAATAAAAAAAAAAAAAAATCACANNCATATATATATATATATATATATA
TGTGTTCGTTCCGACCTT
sequence update 1999. 1.14
Translated Amino Acid sequence 
qr*mxyishi*kdvvylpyhtkrklillykldlqnlvvyvehlqfvpilqllkiqfvk*n
qfsfcvvwkinyifldv*nilhtkmngpschpqnisvhvlrmlvywqmv*siflvemiv*
KXXEKFNIHTNKWENGGSIPNGGGSSMSATYDKKNNCIYLIGGVKF---

---FKFLIFFFIHNKRTILFC*cf**kkkkkkkkiitikkkknhxhiyiyiyicvrsdl
Translated Amino Acid sequence (All Frames) 
Frame A:
tkmngvyfthlercslssiphkkkidftlqtgsskfgglrgafaicsdtstfedpvckvk
sifflcgmedklhlsrcvkytpykdewsfmpptkhkracvadagvlangiiyifggndsl
etxrkv*ytyk*mgkwrqysqwwrffnvgnl*qekqlhlfnwwc*i---

---FKFLIFFFIHNKRTILFC*cf**kkkkkkkkiitikkkknhxhiyiyiyicvrsdl

Frame B:
qr*mxyishi*kdvvylpyhtkrklillykldlqnlvvyvehlqfvpilqllkiqfvk*n
qfsfcvvwkinyifldv*nilhtkmngpschpqnisvhvlrmlvywqmv*siflvemiv*
KXXEKFNIHTNKWENGGSIPNGGGSSMSATYDKKNNCIYLIGGVKF---

---lnf*ffflfttneqfcfvsvfskkkkkkkkkllq*kkkkitxiyiyiyiyvfvpt

Frame C:
kdewxifhtsrkm*fifhttqken*fyftnwifkiwwstwsicnlfryfnf*rssl*ski
nflfvwygr*ttsf*mceiysiqr*mvlhathkt*acmccgcwcigkwynlyfwwk**fr
nxxksliyiqingkmeavfpmvevlqcrqpmtrktiasi*lvvlnl---

---*ifnfffysqqtnnfvllvflvkkkkkkkknyynkkkkksxxyiyiyiymcsfrp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC805 (SLC805Q) /CSM/SL/SLC8-A/SLC805Q.Seq.d/                        961   0.0
SHD512 (SHD512Q) /CSM/SH/SHD5-A/SHD512Q.Seq.d/                        446   e-124
AHO605 (AHO605Q) /CSM/AH/AHO6-A/AHO605Q.Seq.d/                        385   e-106
AFI238 (AFI238Q) /CSM/AF/AFI2-B/AFI238Q.Seq.d/                        260   2e-68
VHQ278 (VHQ278Q) /CSM/VH/VHQ2-D/VHQ278Q.Seq.d/                         38   0.17
VHO249 (VHO249Q) /CSM/VH/VHO2-C/VHO249Q.Seq.d/                         38   0.17
VHD645 (VHD645Q) /CSM/VH/VHD6-B/VHD645Q.Seq.d/                         38   0.17
CHO631 (CHO631Q) /CSM/CH/CHO6-B/CHO631Q.Seq.d/                         38   0.17
CFG811 (CFG811Q) /CSM/CF/CFG8-A/CFG811Q.Seq.d/                         38   0.17
AHO644 (AHO644Q) /CSM/AH/AHO6-B/AHO644Q.Seq.d/                         38   0.17
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061067) Dictyostelium discoideum slug cDNA, clone SLC805.      961   0.0    1
(BJ405250) Dictyostelium discoideum cDNA clone:dds31g03, 3' ...   260   e-122  3
(BJ356369) Dictyostelium discoideum cDNA clone:dda60i02, 3' ...   260   e-104  2
(BJ343848) Dictyostelium discoideum cDNA clone:dda17k10, 3' ...   260   6e-65  1
(AU034389) Dictyostelium discoideum slug cDNA, clone SLC805.       86   6e-18  3
(BG902903) jh_21285.z1 Penaeus chinensis' cephalothorax cDNA...    36   0.47   2
(AM481151) Vitis vinifera, whole genome shotgun sequence, co...    40   0.82   2
(AZ681213) ENTHL30TR Entamoeba histolytica Sheared DNA Entam...    46   1.7    1
(CU606935) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.8    3
(CU928255) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.4    3
dna update 2009. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC088917_1(BC088917|pid:none) Xenopus laevis hypothetical LOC496...    38   0.31
BC077434_1(BC077434|pid:none) Xenopus laevis MGC82233 protein, m...    36   1.2
AE014297_2384(AE014297|pid:none) Drosophila melanogaster chromos...    35   1.5
BT031345_1(BT031345|pid:none) Drosophila melanogaster RE34022 fu...    35   1.5
BT001720_1(BT001720|pid:none) Drosophila melanogaster RE68961 fu...    35   1.5
AY060658_1(AY060658|pid:none) Drosophila melanogaster GH08610 fu...    35   1.5
AE014297_2385(AE014297|pid:none) Drosophila melanogaster chromos...    35   1.5
AK046178_1(AK046178|pid:none) Mus musculus adult male corpora qu...    35   2.0
AK136319_1(AK136319|pid:none) Mus musculus 15 days embryo male t...    35   2.0
AK129061_1(AK129061|pid:none) Mus musculus mRNA for mKIAA0132 pr...    35   2.0
protein update 2009. 6. 2
PSORT 

 psg: 0.64  gvh: 0.26  alm: 0.31  top: 0.63  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.19  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SLC805 is nuc
5' end seq. ID SLC805F
5' end seq. 
>SLC805F.Seq
ACAAAGATGAATGGNGTATATTTCACACATCTAGAAAGATGTAGTTTATCTTCCATACCA
CACAAAAAGAAAATTGATTTTACTTTACAAACTGGATCTTCAAAATTTGGTGGTCTACGT
GGAGCATTTGCAATTTGTTCCGATACTTCAACTTTTGAAGATCCAGTTTGTAAAGTAAAA
TCAATTTTCTTTTTGTGTGGTATGGAAGATAAACTACATCTTTCTAGATGTGTGAAATAT
ACTCCATACAAAGATGAATGGTCCTTCATGCCACCCACAAAACATAAGCGTGCATGTGTT
GCGGATGCTGGTGTATTGGCAAATGGTATAATCTATATTTTTGGTGGAAATGATAGTTTA
GAAACNNNNCGAAAAGTTTAATATACATACAAATAAATGGGAAAATGGAGGCAGTATTCC
CAATGGTGGAGGTTCTTCAATGTCGGCAACCTATGACAAGAAAAACAATTGCATCTATTT
AATTGGTGGTGTTAAATTTA----------
Length of 5' end seq. 500
3' end seq. ID SLC805Z
3' end seq. 
>SLC805Z.Seq
----------TTTAAATTTTTAATTTTTTTTTTTATTCACAACAAACGAACAATTTTGTT
TTGTTAGTGTTTTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAATTATTACAATAAAAAA
AAAAAAAAATCACANNCATATATATATATATATATATATATGTGTTCGTTCCGACCTT
Length of 3' end seq. 168
Connected seq. ID SLC805P
Connected seq. 
>SLC805P.Seq
ACAAAGATGAATGGNGTATATTTCACACATCTAGAAAGATGTAGTTTATCTTCCATACCA
CACAAAAAGAAAATTGATTTTACTTTACAAACTGGATCTTCAAAATTTGGTGGTCTACGT
GGAGCATTTGCAATTTGTTCCGATACTTCAACTTTTGAAGATCCAGTTTGTAAAGTAAAA
TCAATTTTCTTTTTGTGTGGTATGGAAGATAAACTACATCTTTCTAGATGTGTGAAATAT
ACTCCATACAAAGATGAATGGTCCTTCATGCCACCCACAAAACATAAGCGTGCATGTGTT
GCGGATGCTGGTGTATTGGCAAATGGTATAATCTATATTTTTGGTGGAAATGATAGTTTA
GAAACNNNNCGAAAAGTTTAATATACATACAAATAAATGGGAAAATGGAGGCAGTATTCC
CAATGGTGGAGGTTCTTCAATGTCGGCAACCTATGACAAGAAAAACAATTGCATCTATTT
AATTGGTGGTGTTAAATTTA----------TTTAAATTTTTAATTTTTTTTTTTATTCAC
AACAAACGAACAATTTTGTTTTGTTAGTGTTTTTAGTAAAAAAAAAAAAAAAAAAAAAAA
AAAATTATTACAATAAAAAAAAAAAAAAATCACANNCATATATATATATATATATATATA
TGTGTTCGTTCCGACCTT
Length of connected seq. 668
Full length Seq ID -
Full length Seq. -
Length of full length seq. -