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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC789
Library SL
(Link to library)
Clone ID SLC789
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15018-1
Original site URL
Representative seq. ID SLC789E
(Link to Original site)
Representative DNA sequence 
>SLC789 (SLC789Q) /CSM/SL/SLC7-D/SLC789Q.Seq.d/
ATTTCTCTTGGAAGATGGTAAACAAATTTGTAGAGATTTCATTAAAACTTTAGATAATTT
AATTTTAGAAAGATTTTTATTAGAAGATAATGGTTTATGTTCAGAATTAACAGACCTTTA
TATAGAACAAGTTTGTTCAAATTCATCATTTTTCTTAAATATTGAAAGAGTTTCAAAACT
TGGAAAAGATGTATTGATCAAAGTCTTGAATAGAGATGATATACCAATGAAAGAGATTGA
TATTTTTAGATCTACAATCGAGTGGGTTTCTTGTAACACTGTATTATTATCATCATCATC
AACATCAACAACTACAACTACAACTACAAATAATTCAAATTCAATTTTAATTGAACAACA
AGATAAAAATTTGGTATCAAAAGTATTTCATTTAATTAGATTCCCATCAATAGATTATGA
AGATATGGTTAGTGTTGTTGAACCATATAGTCATTTAATTCCTTCAAATTTATTATTAGA
ATCATATAGATTCCTTTCAAAACCAAAGTTAATACCAATGAATGAAAACGATTTACTCAA
TCCTAGATTAACACCAAGAAAGAAAACCAAATCAAACTACATTGGTACCTGGTTGTGATG
TTATATCATTCCAATGTCCTGATCATAAGAAATGTTATTCAGTATCATGGCCAATTCATA
ATTTTAGCGCAATAAAGAGTCAAAAACATGTTAGTAACTGTTTTGAAATGTATGGTTTAA
CTTGGAAAATGTGGGCTTACCCAGCTGGTGAAGCAAAGCACAGTGATAGTTTTTCAGTTT
ATTTAGAAGCAGTTCGTGTAAAAGAGAAGGAATCTTACGAATTTTTAAGAAATACAACAT
TCTTTTTCGGTCTTGTAAATCAAAAGAATAAAACACTTTGTCGTCACTATCCCTCATCTC
CAAATGTTTTATTCAATTATGAGAAAAGTGTTTGGGGTAATGGTTTAATAGAATTAAAAC
TTTTGTATGATAAATCTTTAGGTTATATGGATAATGATTGTGTAACAATTCAATTACATA
TTTTAGAATGTATTGCATTGGATGGTTAAATTTAATTTTTTAATCAATAACAAATATTTG
ACGCCATTATGTCTTTTTTTTTAAAAAAGGTGTATTTATATAAATAATTAGA
sequence update 1999. 6.18
Translated Amino Acid sequence 
FLLEDGKQICRDFIKTLDNLILERFLLEDNGLCSELTDLYIEQVCSNSSFFLNIERVSKL
GKDVLIKVLNRDDIPMKEIDIFRSTIEWVSCNTVLLSSSSTSTTTTTTTNNSNSILIEQQ
DKNLVSKVFHLIRFPSIDYEDMVSVVEPYSHLIPSNLLLESYRFLSKPKLIPMNENDLLN
PRLTPRKKTKSNYIGTWL*cyiipms*s*emlfsimans*f*rnkesktc**lf*nvwfn
lenvglpsw*skaq**ffslfrsssckregilrifkkynilfrsckske*ntlsslslis
kcfiql*ekclg*wfnriktfv**ifrlyg**lcnnsityfrmycigwlnlif*sitni*
rhyvfffkkgvfi*iir
Translated Amino Acid sequence (All Frames) 
Frame A:
islgrw*tnl*rfh*nfr*fnfrkifirr*wfmfrinrplyrtslfkfiiflky*ksfkt
wkrcidqsle*r*ytnerd*yf*iynrvgfl*hciiiiiininnynynyk*fkfnfn*tt
r*kfgiksisfn*ipinrl*ryg*cc*ti*sfnsfkfiirii*ipfktkvntne*krftq
s*intkkenqiklhwylvvmlyhsnvliirnviqyhgqfiilaq*rvknmlvtvlkcmv*
lgkcgltqlvkqstvivfqfi*kqfv*krrnltnf*eiqhsfsvl*ikrikhfvvtiphl
qmfysimrkvfgvmv**n*nfcminl*viwimiv*qfnyif*nvlhwmvkfnflinnkyl
tplclff*krciyinn*


Frame B:
FLLEDGKQICRDFIKTLDNLILERFLLEDNGLCSELTDLYIEQVCSNSSFFLNIERVSKL
GKDVLIKVLNRDDIPMKEIDIFRSTIEWVSCNTVLLSSSSTSTTTTTTTNNSNSILIEQQ
DKNLVSKVFHLIRFPSIDYEDMVSVVEPYSHLIPSNLLLESYRFLSKPKLIPMNENDLLN
PRLTPRKKTKSNYIGTWL*cyiipms*s*emlfsimans*f*rnkesktc**lf*nvwfn
lenvglpsw*skaq**ffslfrsssckregilrifkkynilfrsckske*ntlsslslis
kcfiql*ekclg*wfnriktfv**ifrlyg**lcnnsityfrmycigwlnlif*sitni*
rhyvfffkkgvfi*iir


Frame C:
fswkmvnkfveislkl*ii*f*kdfy*kimvyvqn*qtfi*nkfvqihhfs*ilkefqnl
ekmy*sks*iemiyq*krlifldlqssgflvtlyyyhhhqhqqlqlqlqiiqiqf*lnnk
ikiwyqkyfi*ldshq*imkiwlvllnhivi*flqiyy*nhidsfqnqs*yq*mktiysi
ld*hqerkpnqttlvpgcdvisfqcpdhkkcysvswpihnfsaiksqkhvsncfemyglt
wkmwaypageakhsdsfsvyleavrvkekesyeflrnttfffglvnqknktlcrhypssp
nvlfnyeksvwgnglielkllydkslgymdndcvtiqlhilecialdg*i*ffnq*qifd
aimsfflkkvylyk*l
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC789 (SLC789Q) /CSM/SL/SLC7-D/SLC789Q.Seq.d/                       2190   0.0
SSF141 (SSF141Q) /CSM/SS/SSF1-B/SSF141Q.Seq.d/                       1980   0.0
AFK655 (AFK655Q) /CSM/AF/AFK6-C/AFK655Q.Seq.d/                       1219   0.0
VFC724 (VFC724Q) /CSM/VF/VFC7-A/VFC724Q.Seq.d/                         60   8e-08
AFI807 (AFI807Q) /CSM/AF/AFI8-A/AFI807Q.Seq.d/                         60   8e-08
VSI792 (VSI792Q) /CSM/VS/VSI7-D/VSI792Q.Seq.d/                         52   2e-05
SLF515 (SLF515Q) /CSM/SL/SLF5-A/SLF515Q.Seq.d/                         52   2e-05
SFK818 (SFK818Q) /CSM/SF/SFK8-A/SFK818Q.Seq.d/                         52   2e-05
FC-AH18 (FC-AH18Q) /CSM/FC/FC-AH/FC-AH18Q.Seq.d/                       52   2e-05
AHO191 (AHO191Q) /CSM/AH/AHO1-D/AHO191Q.Seq.d/                         52   2e-05
own update 2003. 6.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034384) Dictyostelium discoideum slug cDNA, clone SLC789.     1051   0.0    3
(C92730) Dictyostelium discoideum slug cDNA, clone SSF141.       1051   0.0    3
(BJ343306) Dictyostelium discoideum cDNA clone:dda22m14, 3' ...   950   0.0    3
(AU061064) Dictyostelium discoideum slug cDNA, clone SLC789.      591   0.0    2
(AU072811) Dictyostelium discoideum slug cDNA, clone SSF141.      476   e-130  1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   0.008  15
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   0.032  9
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    38   0.063  13
(CP000395) Borrelia afzelii PKo, complete genome.                  34   0.15   17
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    34   0.16   16
dna update 2009. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008218_884(AP008218|pid:none) Oryza sativa (japonica cultivar-...    62   5e-08
AC016795_20(AC016795|pid:none) Arabidopsis thaliana chromosome I...    57   9e-07
AK226819_1(AK226819|pid:none) Arabidopsis thaliana mRNA for ubiq...    57   9e-07
(Q84WU2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 13;...    57   9e-07
AF302663_1(AF302663|pid:none) Arabidopsis thaliana ubiquitin-spe...    57   1e-06
AF360198_1(AF360198|pid:none) Arabidopsis thaliana putative ubiq...    57   1e-06
(Q9FPT1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 12;...    57   1e-06
AP002543_13(AP002543|pid:none) Arabidopsis thaliana genomic DNA,...    57   1e-06
AC005956_19(AC005956|pid:none) Arabidopsis thaliana chromosome 2...    56   3e-06
AL137081_12(AL137081|pid:none) Arabidopsis thaliana DNA chromoso...    54   1e-05
protein update 2009. 7. 4
PSORT 

 psg: 0.53  gvh: 0.39  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLC789 is nuc
5' end seq. ID SLC789F
5' end seq. 
>SLC789F.Seq
ATTTCTCTTGGAAGATGGTAAACAAATTTGTAGAGATTTCATTAAAACTTTAGATAATTT
AATTTTAGAAAGATTTTTATTAGAAGATAATGGTTTATGTTCAGAATTAACAGACCTTTA
TATAGAACAAGTTTGTTCAAATTCATCATTTTTCTTAAATATTGAAAGAGTTTCAAAACT
TGGAAAAGATGTATTGATCAAAGTCTTGAATAGAGATGATATACCAATGAAAGAGATTGA
TATTTTTAGATCTACAATCGAGTGGGTTTCTTGTAACACTGTATTATTATCATCATCATC
AACATCAACAACTACAACTACAACTACAAATAATTCAAATTCAATTTTAATTGAACAACA
AGATAAAAATTTGGTATCAAAAGTATTTCATTTAATTAGATTCCCATCAATAGATTATGA
AGATATGGTTAGTGTTGTTGAACCATATAGTCATTTAATTCCTTCAAATTTATTATTAGA
ATCATATAGATTCCTTTCAAAACCAAAGTTAATACCAATGAATGAAAACGATTTACTCAA
TCCTAGATTAACACCAAGAAAGAAAACCAAATCAAACTACATTGGTACCTGGTTGTGATG
TTATA----------
Length of 5' end seq. 605
3' end seq. ID SLC789Z
3' end seq. 
>SLC789Z.Seq
----------ATGAAAACGATTTACTCAATCCTAGATTAACACCAAGAAAGAAACCAAAT
CAAACTACATTGGTACCTGGTTGTGATGTTATATCATTCCAATGTCCTGATCATAAGAAA
TGTTATTCAGTATCATGGCCAATTCATAATTTTAGCGCAATAAAGAGTCAAAAACATGTT
AGTAACTGTTTTGAAATGTATGGTTTAACTTGGAAAATGTGGGCTTACCCAGCTGGTGAA
GCAAAGCACAGTGATAGTTTTTCAGTTTATTTAGAAGCAGTTCGTGTAAAAGAGAAGGAA
TCTTACGAATTTTTAAGAAATACAACATTCTTTTTCGGTCTTGTAAATCAAAAGAATAAA
ACACTTTGTCGTCACTATCCCTCATCTCCAAATGTTTTATTCAATTATGAGAAAAGTGTT
TGGGGTAATGGTTTAATAGAATTAAAACTTTTGTATGATAAATCTTTAGGTTATATGGAT
AATGATTGTGTAACAATTCAATTACATATTTTAGAATGTATTGCATTGGATGGTTAAATT
TAATTTTTTAATCAATAACAAATATTTGACGCCATTATGTCTTTTTTTTTAAAAAAGGTG
TATTTATATAAATAATTAGA
Length of 3' end seq. 610
Connected seq. ID SLC789P
Connected seq. 
>SLC789P.Seq
ATTTCTCTTGGAAGATGGTAAACAAATTTGTAGAGATTTCATTAAAACTTTAGATAATTT
AATTTTAGAAAGATTTTTATTAGAAGATAATGGTTTATGTTCAGAATTAACAGACCTTTA
TATAGAACAAGTTTGTTCAAATTCATCATTTTTCTTAAATATTGAAAGAGTTTCAAAACT
TGGAAAAGATGTATTGATCAAAGTCTTGAATAGAGATGATATACCAATGAAAGAGATTGA
TATTTTTAGATCTACAATCGAGTGGGTTTCTTGTAACACTGTATTATTATCATCATCATC
AACATCAACAACTACAACTACAACTACAAATAATTCAAATTCAATTTTAATTGAACAACA
AGATAAAAATTTGGTATCAAAAGTATTTCATTTAATTAGATTCCCATCAATAGATTATGA
AGATATGGTTAGTGTTGTTGAACCATATAGTCATTTAATTCCTTCAAATTTATTATTAGA
ATCATATAGATTCCTTTCAAAACCAAAGTTAATACCAATGAATGAAAACGATTTACTCAA
TCCTAGATTAACACCAAGAAAGAAAACCAAATCAAACTACATTGGTACCTGGTTGTGATG
TTATA----------ATGAAAACGATTTACTCAATCCTAGATTAACACCAAGAAAGAAAC
CAAATCAAACTACATTGGTACCTGGTTGTGATGTTATATCATTCCAATGTCCTGATCATA
AGAAATGTTATTCAGTATCATGGCCAATTCATAATTTTAGCGCAATAAAGAGTCAAAAAC
ATGTTAGTAACTGTTTTGAAATGTATGGTTTAACTTGGAAAATGTGGGCTTACCCAGCTG
GTGAAGCAAAGCACAGTGATAGTTTTTCAGTTTATTTAGAAGCAGTTCGTGTAAAAGAGA
AGGAATCTTACGAATTTTTAAGAAATACAACATTCTTTTTCGGTCTTGTAAATCAAAAGA
ATAAAACACTTTGTCGTCACTATCCCTCATCTCCAAATGTTTTATTCAATTATGAGAAAA
GTGTTTGGGGTAATGGTTTAATAGAATTAAAACTTTTGTATGATAAATCTTTAGGTTATA
TGGATAATGATTGTGTAACAATTCAATTACATATTTTAGAATGTATTGCATTGGATGGTT
AAATTTAATTTTTTAATCAATAACAAATATTTGACGCCATTATGTCTTTTTTTTTAAAAA
AGGTGTATTTATATAAATAATTAGA
Length of connected seq. 1215
Full length Seq ID SLC789E
Full length Seq. 
>SLC789E.Seq
ATTTCTCTTGGAAGATGGTAAACAAATTTGTAGAGATTTCATTAAAACTTTAGATAATTT
AATTTTAGAAAGATTTTTATTAGAAGATAATGGTTTATGTTCAGAATTAACAGACCTTTA
TATAGAACAAGTTTGTTCAAATTCATCATTTTTCTTAAATATTGAAAGAGTTTCAAAACT
TGGAAAAGATGTATTGATCAAAGTCTTGAATAGAGATGATATACCAATGAAAGAGATTGA
TATTTTTAGATCTACAATCGAGTGGGTTTCTTGTAACACTGTATTATTATCATCATCATC
AACATCAACAACTACAACTACAACTACAAATAATTCAAATTCAATTTTAATTGAACAACA
AGATAAAAATTTGGTATCAAAAGTATTTCATTTAATTAGATTCCCATCAATAGATTATGA
AGATATGGTTAGTGTTGTTGAACCATATAGTCATTTAATTCCTTCAAATTTATTATTAGA
ATCATATAGATTCCTTTCAAAACCAAAGTTAATACCAATGAATGAAAACGATTTACTCAA
TCCTAGATTAACACCAAGAAAGAAAACCAAATCAAACTACATTGGTACCTGGTTGTGATG
TTATATCATTCCAATGTCCTGATCATAAGAAATGTTATTCAGTATCATGGCCAATTCATA
ATTTTAGCGCAATAAAGAGTCAAAAACATGTTAGTAACTGTTTTGAAATGTATGGTTTAA
CTTGGAAAATGTGGGCTTACCCAGCTGGTGAAGCAAAGCACAGTGATAGTTTTTCAGTTT
ATTTAGAAGCAGTTCGTGTAAAAGAGAAGGAATCTTACGAATTTTTAAGAAATACAACAT
TCTTTTTCGGTCTTGTAAATCAAAAGAATAAAACACTTTGTCGTCACTATCCCTCATCTC
CAAATGTTTTATTCAATTATGAGAAAAGTGTTTGGGGTAATGGTTTAATAGAATTAAAAC
TTTTGTATGATAAATCTTTAGGTTATATGGATAATGATTGTGTAACAATTCAATTACATA
TTTTAGAATGTATTGCATTGGATGGTTAAATTTAATTTTTTAATCAATAACAAATATTTG
ACGCCATTATGTCTTTTTTTTTAAAAAAGGTGTATTTATATAAATAATTAGA
Length of full length seq. 1132