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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC787
Library SL
(Link to library)
Clone ID SLC787
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16054-1
Original site URL
Representative seq. ID SLC787P
(Link to Original site)
Representative DNA sequence 
>SLC787 (SLC787Q) /CSM/SL/SLC7-D/SLC787Q.Seq.d/
GCCAGCAAAGAAGGTTAAAGCAGCACCAGAGATTTGTTTAGAGATTAAATTCGTTTTGAA
TGAACCACCAAAGGAAGTACTCAAAGGTATCGTATTGGATGGTGTATGGAACTCTGAAAA
CAATTTCGGTAGCTTAATCAATAATCCACATTGGATCAAATGCACTCAATATCTTTTAAG
CATCAAAGATGAAATTACACCAATCACATTGAAACTCAGACAACCAGAAGGCACCGATCA
AAGATGTTCCTTCTTTGTCATCAACTATGATCCATTCTACAATGGCAGTAAAAAGGTTAT
ATTGGATACCACCAATGATATCAAAAAAGTTAGTAGTTTCAATTCACCAATCCCAGCAAC
CTCTGTCGATTGTAAGATCGATTTAGAGCCAGGTCAATATTGTATCATCCCATACGCCGA
AAGTTTTGCTTTCTCTGGCACTTACAAATTCAATTTAGACTCTGAGAAATTGGATAACTG
TGAATTCTATGCACTTCCAAAGAGTCAAGAACAAGCTTGGAATGAAATCACCGTCGATGG
TCTTTGGACCACCGCXXXXXXXXXXGATGCTGGTAAACGTGCTATCGAATTCAGAGAACA
AGTCGGTAAAACTGAATCCTTCAAATTCTCTTGTTCCACTGGTTGCACTTTAACCCTCGA
CGAAGGTACATACATTGTCATTCCATCAACTTATGATCATGGTATCGAAGGTGCTTTCCA
TTTAACACTTTTCACCGATGATAAGAATGCCACCTTCCAACCATTAACAAACGCTTTCCA
AGAGGTTGAACAAGTTAAAGGTACTTGGGTTGGTAAATCTGCTGGTGGTTCTCCAAATCA
ACCAACTTTCTTCAATAATCCACAATTCCATTTGAAAGTACCTGCCTCTGATAAAGATGA
AGTCATCGCCGTTCAATTGATTCAAGATTCAACCATTGCCGATGAAGGTATTGGTTTCAT
TGTTTTATCTCGTGATTCTCATTCTGAACCATTGACTGCTCAAGATTTCCAAAATGAAAT
GGTTTTCACTAAAACTTCAAATTGGGAAAAGAGAAATGATATCGTTTGTCGTCTTCATGT
TAAACCAGAATCACCAAGAGAATTCACTATCATTCCTTCAACTTTTGATCCAAGTGTTAA
TCGTTCATTCAAACTTCAAGTTTATTCTGATGTTTCAATTTCATTAGATGAAATTGAACA
AAAAGATGAATCCTCTGATTCTGAACAAAATGATGATTAAAAAAAAAAAAAATATTA
sequence update 1999. 1.14
Translated Amino Acid sequence 
PAKKVKAAPEICLEIKFVLNEPPKEVLKGIVLDGVWNSENNFGSLINNPHWIKCTQYLLS
IKDEITPITLKLRQPEGTDQRCSFFVINYDPFYNGSKKVILDTTNDIKKVSSFNSPIPAT
SVDCKIDLEPGQYCIIPYAESFAFSGTYKFNLDSEKLDNCEFYALPKSQEQAWNEITVDG
LWTT---

---DAGKRAIEFREQVGKTESFKFSCSTGCTLTLDEGTYIVIPSTYDHGIEGAFHLTLFT
DDKNATFQPLTNAFQEVEQVKGTWVGKSAGGSPNQPTFFNNPQFHLKVPASDKDEVIAVQ
LIQDSTIADEGIGFIVLSRDSHSEPLTAQDFQNEMVFTKTSNWEKRNDIVCRLHVKPESP
REFTIIPSTFDPSVNRSFKLQVYSDVSISLDEIEQKDESSDSEQNDD*kkkky
Translated Amino Acid sequence (All Frames) 
Frame A:
askeg*sstrdlfrd*irfe*ttkgstqryrigwcmel*kqfr*lnq*stldqmhsisfk
hqr*nytnhietqttrrhrskmfllchql*silqwq*kgyigyhq*yqks**fqftnpsn
lcrl*drfrarsilyhpirrkfcflwhlqiqfrl*eig*l*ilctskesrtsle*nhrrw
sldhr---

---DAGKRAIEFREQVGKTESFKFSCSTGCTLTLDEGTYIVIPSTYDHGIEGAFHLTLFT
DDKNATFQPLTNAFQEVEQVKGTWVGKSAGGSPNQPTFFNNPQFHLKVPASDKDEVIAVQ
LIQDSTIADEGIGFIVLSRDSHSEPLTAQDFQNEMVFTKTSNWEKRNDIVCRLHVKPESP
REFTIIPSTFDPSVNRSFKLQVYSDVSISLDEIEQKDESSDSEQNDD*kkkky

Frame B:
PAKKVKAAPEICLEIKFVLNEPPKEVLKGIVLDGVWNSENNFGSLINNPHWIKCTQYLLS
IKDEITPITLKLRQPEGTDQRCSFFVINYDPFYNGSKKVILDTTNDIKKVSSFNSPIPAT
SVDCKIDLEPGQYCIIPYAESFAFSGTYKFNLDSEKLDNCEFYALPKSQEQAWNEITVDG
LWTT---

---mlvnvlsnsenksvklnpsnslvplval*pstkvhtlsfhqlmimvskvlsi*hfsp
mirmppsnh*qtlskrlnklkvlglvnllvvlqinqlssiihnsi*kylplikmksspfn
*fkiqplpmkvlvslfylvililnh*llkiskmkwfslklqigkremisfvvfmlnqnhq
enslsflqlliqvlivhsnfkfilmfqfh*mklnkkmnplilnkmmikkkkni

Frame C:
qqrrlkqhqrfv*rlnsf*mnhqrkyskvsywmvygtlktisva*siihigsnalnif*a
skmklhqsh*nsdnqkapikdvpslsstmihstmavkrlywippmiskklvvsihqsqqp
lsivrsi*sqvnivsshtpkvllslaltnsi*tlrnwitvnsmhfqrvknklgmkspsmv
fgpp---

---cw*tcyriqrtsr*n*ilqillfhwlhfnprrryihchsinl*swyrrcfpfntfhr
**echlptinkrfprg*ts*rylgw*icwwfskstnflq*stipfestcl**r*shrrsi
dsrfnhcr*rywfhcfis*fsf*tidcsrfpk*ngfh*nfklgkek*yrlsssc*tritk
rihyhsfnf*skc*sfiqtsslf*cfnfir*n*tkr*il*f*tk**lkkkkil
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC787 (SLC787Q) /CSM/SL/SLC7-D/SLC787Q.Seq.d/                       2395   0.0
VFL249 (VFL249Q) /CSM/VF/VFL2-C/VFL249Q.Seq.d/                       1233   0.0
SSC516 (SSC516Q) /CSM/SS/SSC5-A/SSC516Q.Seq.d/                       1231   0.0
SFH493 (SFH493Q) /CSM/SF/SFH4-D/SFH493Q.Seq.d/                       1213   0.0
VHL339 (VHL339Q) /CSM/VH/VHL3-B/VHL339Q.Seq.d/                       1178   0.0
SLF205 (SLF205Q) /CSM/SL/SLF2-A/SLF205Q.Seq.d/                       1146   0.0
SLC473 (SLC473Q) /CSM/SL/SLC4-D/SLC473Q.Seq.d/                        910   0.0
SFD653 (SFD653Q) /CSM/SF/SFD6-C/SFD653Q.Seq.d/                         90   1e-16
VFO135 (VFO135Q) /CSM/VF/VFO1-B/VFO135Q.Seq.d/                         40   0.080
VFM323 (VFM323Q) /CSM/VF/VFM3-A/VFM323Q.Seq.d/                         40   0.080
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF525418) Dictyostelium discoideum calpain-like cysteine pr...  1332   0.0    1
(AU034383) Dictyostelium discoideum slug cDNA, clone SLC787.     1332   0.0    1
(BJ433961) Dictyostelium discoideum cDNA clone:ddv23a14, 3' ...  1233   0.0    1
(BJ401030) Dictyostelium discoideum cDNA clone:dds15j24, 3' ...  1191   0.0    2
(AU061062) Dictyostelium discoideum slug cDNA, clone SLC787.     1100   0.0    1
(BJ443590) Dictyostelium discoideum cDNA clone:ddv53n09, 3' ...  1007   0.0    4
(AU052847) Dictyostelium discoideum slug cDNA, clone SLF205.      872   0.0    2
(AU060977) Dictyostelium discoideum slug cDNA, clone SLC473.      908   0.0    2
(BJ415713) Dictyostelium discoideum cDNA clone:ddv23a14, 5' ...   787   0.0    1
(AU071783) Dictyostelium discoideum slug cDNA, clone SSC516.      476   e-129  1
dna update 2009. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL954831_9(AL954831|pid:none) Zebrafish DNA sequence from clone ...    55   7e-06
BC077421_1(BC077421|pid:none) Xenopus laevis cDNA clone MGC:8218...    53   2e-05
BC091999_1(BC091999|pid:none) Danio rerio CAPN1 protein, mRNA (c...    52   3e-05
AY639153_1(AY639153|pid:none) Gecarcinus lateralis calpain B (Ca...    52   3e-05
(Q4V8Q1) RecName: Full=Calpain 11;          EC=3.4.22.-; AltName...    52   6e-05
(P34308) RecName: Full=Calpain clp-1;          EC=3.4.22.-;  &L2...    51   7e-05
BC169895_1(BC169895|pid:none) Xenopus laevis calpain, mRNA (cDNA...    51   1e-04
BC169897_1(BC169897|pid:none) Xenopus laevis calpain, mRNA (cDNA...    51   1e-04
AB016726_1(AB016726|pid:none) Schistosoma japonicum mRNA for cal...    49   3e-04
AY808568_1(AY808568|pid:none) Schistosoma japonicum SJCHGC05999 ...    49   3e-04
protein update 2009. 6. 2
PSORT 

 psg: 0.76  gvh: 0.35  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLC787 is nuc
5' end seq. ID SLC787F
5' end seq. 
>SLC787F.Seq
GCCAGCAAAGAAGGTTAAAGCAGCACCAGAGATTTGTTTAGAGATTAAATTCGTTTTGAA
TGAACCACCAAAGGAAGTACTCAAAGGTATCGTATTGGATGGTGTATGGAACTCTGAAAA
CAATTTCGGTAGCTTAATCAATAATCCACATTGGATCAAATGCACTCAATATCTTTTAAG
CATCAAAGATGAAATTACACCAATCACATTGAAACTCAGACAACCAGAAGGCACCGATCA
AAGATGTTCCTTCTTTGTCATCAACTATGATCCATTCTACAATGGCAGTAAAAAGGTTAT
ATTGGATACCACCAATGATATCAAAAAAGTTAGTAGTTTCAATTCACCAATCCCAGCAAC
CTCTGTCGATTGTAAGATCGATTTAGAGCCAGGTCAATATTGTATCATCCCATACGCCGA
AAGTTTTGCTTTCTCTGGCACTTACAAATTCAATTTAGACTCTGAGAAATTGGATAACTG
TGAATTCTATGCACTTCCAAAGAGTCAAGAACAAGCTTGGAATGAAATCACCGTCGATGG
TCTTTGGACCACCGC----------
Length of 5' end seq. 555
3' end seq. ID SLC787Z
3' end seq. 
>SLC787Z.Seq
----------GATGCTGGTAAACGTGCTATCGAATTCAGAGAACAAGTCGGTAAAACTGA
ATCCTTCAAATTCTCTTGTTCCACTGGTTGCACTTTAACCCTCGACGAAGGTACATACAT
TGTCATTCCATCAACTTATGATCATGGTATCGAAGGTGCTTTCCATTTAACACTTTTCAC
CGATGATAAGAATGCCACCTTCCAACCATTAACAAACGCTTTCCAAGAGGTTGAACAAGT
TAAAGGTACTTGGGTTGGTAAATCTGCTGGTGGTTCTCCAAATCAACCAACTTTCTTCAA
TAATCCACAATTCCATTTGAAAGTACCTGCCTCTGATAAAGATGAAGTCATCGCCGTTCA
ATTGATTCAAGATTCAACCATTGCCGATGAAGGTATTGGTTTCATTGTTTTATCTCGTGA
TTCTCATTCTGAACCATTGACTGCTCAAGATTTCCAAAATGAAATGGTTTTCACTAAAAC
TTCAAATTGGGAAAAGAGAAATGATATCGTTTGTCGTCTTCATGTTAAACCAGAATCACC
AAGAGAATTCACTATCATTCCTTCAACTTTTGATCCAAGTGTTAATCGTTCATTCAAACT
TCAAGTTTATTCTGATGTTTCAATTTCATTAGATGAAATTGAACAAAAAGATGAATCCTC
TGATTCTGAACAAAATGATGATTAAAAAAAAAAAAAATATTA
Length of 3' end seq. 692
Connected seq. ID SLC787P
Connected seq. 
>SLC787P.Seq
GCCAGCAAAGAAGGTTAAAGCAGCACCAGAGATTTGTTTAGAGATTAAATTCGTTTTGAA
TGAACCACCAAAGGAAGTACTCAAAGGTATCGTATTGGATGGTGTATGGAACTCTGAAAA
CAATTTCGGTAGCTTAATCAATAATCCACATTGGATCAAATGCACTCAATATCTTTTAAG
CATCAAAGATGAAATTACACCAATCACATTGAAACTCAGACAACCAGAAGGCACCGATCA
AAGATGTTCCTTCTTTGTCATCAACTATGATCCATTCTACAATGGCAGTAAAAAGGTTAT
ATTGGATACCACCAATGATATCAAAAAAGTTAGTAGTTTCAATTCACCAATCCCAGCAAC
CTCTGTCGATTGTAAGATCGATTTAGAGCCAGGTCAATATTGTATCATCCCATACGCCGA
AAGTTTTGCTTTCTCTGGCACTTACAAATTCAATTTAGACTCTGAGAAATTGGATAACTG
TGAATTCTATGCACTTCCAAAGAGTCAAGAACAAGCTTGGAATGAAATCACCGTCGATGG
TCTTTGGACCACCGC----------GATGCTGGTAAACGTGCTATCGAATTCAGAGAACA
AGTCGGTAAAACTGAATCCTTCAAATTCTCTTGTTCCACTGGTTGCACTTTAACCCTCGA
CGAAGGTACATACATTGTCATTCCATCAACTTATGATCATGGTATCGAAGGTGCTTTCCA
TTTAACACTTTTCACCGATGATAAGAATGCCACCTTCCAACCATTAACAAACGCTTTCCA
AGAGGTTGAACAAGTTAAAGGTACTTGGGTTGGTAAATCTGCTGGTGGTTCTCCAAATCA
ACCAACTTTCTTCAATAATCCACAATTCCATTTGAAAGTACCTGCCTCTGATAAAGATGA
AGTCATCGCCGTTCAATTGATTCAAGATTCAACCATTGCCGATGAAGGTATTGGTTTCAT
TGTTTTATCTCGTGATTCTCATTCTGAACCATTGACTGCTCAAGATTTCCAAAATGAAAT
GGTTTTCACTAAAACTTCAAATTGGGAAAAGAGAAATGATATCGTTTGTCGTCTTCATGT
TAAACCAGAATCACCAAGAGAATTCACTATCATTCCTTCAACTTTTGATCCAAGTGTTAA
TCGTTCATTCAAACTTCAAGTTTATTCTGATGTTTCAATTTCATTAGATGAAATTGAACA
AAAAGATGAATCCTCTGATTCTGAACAAAATGATGATTAAAAAAAAAAAAAATATTA
Length of connected seq. 1247
Full length Seq ID -
Full length Seq. -
Length of full length seq. -