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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC762
Library SL
(Link to library)
Clone ID SLC762
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLC762Z
(Link to Original site)
Representative DNA sequence 
>SLC762 (SLC762Q) /CSM/SL/SLC7-C/SLC762Q.Seq.d/
XXXXXXXXXXCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCAT
CAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATTGGTAACGAAC
GTTTCCGTTGTCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTA
TCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTAT
ACGGTAACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGA
ACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCCCCACCAG
AACGTAAATACTCTGTTTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAAC
AAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAAT
GTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTT
sequence update 1998. 5.14
Translated Amino Acid sequence 
---YVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGI
HETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPE
RKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tinkyvvfyln
Translated Amino Acid sequence (All Frames) 
Frame A:
---YVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGI
HETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPE
RKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tinkyvvfyln


Frame B:
---tspstlklkckllphhqpsknhtnyqtvkssplvtnvsvvqkpssnhhs*vwnqlvs
tkppttps*nvmlisvkiytvtssypvvqlcsqvlliv*tkn*ll*phqp*klkslphqn
vntlfglvdls*lhsqlsnkcgspkknmtnqvhqlstenvskqlinmlyfi*t


Frame C:
---rrprl*s*nanccliisprkiiritrrsshhhw*rtfplsrsplptiilrygiswyp
rnhlqlhhem*c*yp*rfir*rrlirwynyvpryc*syeqrincfspinhen*nhcptrt
*ilcldwwiylsftlnfptnvdlqrri*rirsincpqkmflnn**iccilfkl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA591 (VHA591Q) /CSM/VH/VHA5-D/VHA591Q.Seq.d/                       1017   0.0
VFG331 (VFG331Q) /CSM/VF/VFG3-B/VFG331Q.Seq.d/                       1017   0.0
VFD695 (VFD695Q) /CSM/VF/VFD6-D/VFD695Q.Seq.d/                       1017   0.0
SLH419 (SLH419Q) /CSM/SL/SLH4-A/SLH419Q.Seq.d/                       1017   0.0
SLH375 (SLH375Q) /CSM/SL/SLH3-D/SLH375Q.Seq.d/                       1017   0.0
SLH340 (SLH340Q) /CSM/SL/SLH3-B/SLH340Q.Seq.d/                       1017   0.0
SLH278 (SLH278Q) /CSM/SL/SLH2-D/SLH278Q.Seq.d/                       1017   0.0
SLH102 (SLH102Q) /CSM/SL/SLH1-A/SLH102Q.Seq.d/                       1017   0.0
SLF423 (SLF423Q) /CSM/SL/SLF4-A/SLF423Q.Seq.d/                       1017   0.0
SLF107 (SLF107Q) /CSM/SL/SLF1-A/SLF107Q.Seq.d/                       1017   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284267) Dictyostelium discoideum gamete cDNA clone:FC-AG0...  1017   0.0    1
(AU284266) Dictyostelium discoideum gamete cDNA clone:FC-AG0...  1017   0.0    1
(AU052977) Dictyostelium discoideum slug cDNA, clone SLF423.     1017   0.0    1
(AU052792) Dictyostelium discoideum slug cDNA, clone SLF107.     1017   0.0    1
(AU052335) Dictyostelium discoideum slug cDNA, clone SLD159.     1017   0.0    1
(AU052290) Dictyostelium discoideum slug cDNA, clone SLA747.     1017   0.0    1
(AU052217) Dictyostelium discoideum slug cDNA, clone SLA262.     1017   0.0    1
(AU052177) Dictyostelium discoideum slug cDNA, clone SLA180.     1017   0.0    1
(AU040004) Dictyostelium discoideum slug cDNA, clone SLH419.     1017   0.0    1
(AU039983) Dictyostelium discoideum slug cDNA, clone SLH375.     1017   0.0    1
dna update 2009. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   319   2e-86
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   319   2e-86
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        319   2e-86
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   315   4e-85
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   315   4e-85
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   315   4e-85
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          312   3e-84
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   312   4e-84
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   311   6e-84
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   310   2e-83
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC762 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC762Z
3' end seq. 
>SLC762Z.Seq
----------CTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCAT
CAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATTGGTAACGAAC
GTTTCCGTTGTCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTA
TCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTAT
ACGGTAACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGA
ACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCCCCACCAG
AACGTAAATACTCTGTTTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAAC
AAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAAT
GTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTT
Length of 3' end seq. 513
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -