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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC751
Library SL
(Link to library)
Clone ID SLC751
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLC751F
(Link to Original site)
Representative DNA sequence 
>SLC751 (SLC751Q) /CSM/SL/SLC7-C/SLC751Q.Seq.d/
GAAGATGTTCAAGCTTTAGTTATCGATAACGGTTCTGGTATGTGTAAAGCCGGTTTTGCT
GGTGATGATGCCCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGT
GTTATGGTCGGTATGGGTCAANNNNACTCATATGTAGGTGATGAAGCCCAATCAAAGAGA
GGTATCTTAACCCTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGATGATATG
GAAAAAATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCCCCAGAAGAACACCCA
GTTCTCTTAACTGAAGCCCCATTAAATCCAAAGGCCAACAGAGAAAAAATGACCCAAATT
ATGTTTGAAACCTTCAACACCCCAGCCATGTACGTCGCCATTCAAGCCGTCTTATCCTTA
TATGCCTCTGGTCGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTCTCCCACACT
GTACCAATCTATGAAGGTTATGCTTTACCACATGCCATCTTACGTTTAGATTTAGCTGGT
CGTGATCTTACCGATTACATGATGAAAATTTTAACTGAACGTGGTTACTCATTCACCACC
ACTGCCGAAAGAGXXXXXXXXXX
sequence update 1999. 1.14
Translated Amino Acid sequence 
EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQXXSYVGDEAQSKR
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG
RDLTDYMMKILTERGYSFTTTAER---
Translated Amino Acid sequence (All Frames) 
Frame A:
EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQXXSYVGDEAQSKR
GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG
RDLTDYMMKILTERGYSFTTTAER---


Frame B:
kmfkl*lsitvlvcvkpvllvmmphvlfshqllvvqdtlvlwsvwvxxthm*vmkpnqre
vs*psntqlntvslptgmiwkksgiilstmnsvlpqkntqfs*lkph*iqrptekk*pkl
clkpstpqpctspfkpsypymplvvppvllwiqvmvsptlyqsmkvmlyhmpsyv*i*lv
vilpit**kf*lnvvthspplpk---


Frame C:
rcssfsyr*rfwyv*srfcw**cptccfpincwsskthwcygrygsxxlicr**spiker
ylnpqipn*tryryqlg*ygknlasyflq*tpccprrtpssln*spikskgqqrkndpny
v*nlqhpshvrrhssrliliclwsyhrycygfr*wclphctnl*rlcfttchltfrfsws
*syrlhdenfn*twllihhhcrk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC751 (SLC751Q) /CSM/SL/SLC7-C/SLC751Q.Seq.d/                       1191   0.0
VFO588 (VFO588Q) /CSM/VF/VFO5-D/VFO588Q.Seq.d/                       1183   0.0
VFM814 (VFM814Q) /CSM/VF/VFM8-A/VFM814Q.Seq.d/                       1183   0.0
VFM550 (VFM550Q) /CSM/VF/VFM5-C/VFM550Q.Seq.d/                       1183   0.0
VFM463 (VFM463Q) /CSM/VF/VFM4-C/VFM463Q.Seq.d/                       1183   0.0
VFL880 (VFL880Q) /CSM/VF/VFL8-D/VFL880Q.Seq.d/                       1183   0.0
VFL749 (VFL749Q) /CSM/VF/VFL7-C/VFL749Q.Seq.d/                       1183   0.0
VFL740 (VFL740Q) /CSM/VF/VFL7-B/VFL740Q.Seq.d/                       1183   0.0
VFL458 (VFL458Q) /CSM/VF/VFL4-C/VFL458Q.Seq.d/                       1183   0.0
VFL313 (VFL313Q) /CSM/VF/VFL3-A/VFL313Q.Seq.d/                       1183   0.0
own update 2001.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061047) Dictyostelium discoideum slug cDNA, clone SLC751.     1189   0.0    1
(X03281) Dictyostelium discoideum gene for actin A8.             1181   0.0    1
(AU060635) Dictyostelium discoideum slug cDNA, clone SLK687.     1181   0.0    1
(BJ416461) Dictyostelium discoideum cDNA clone:ddv26c13, 5' ...  1174   0.0    1
(BJ416098) Dictyostelium discoideum cDNA clone:ddv24o23, 5' ...  1174   0.0    1
(BJ409803) Dictyostelium discoideum cDNA clone:ddv10g05, 5' ...  1174   0.0    1
(BJ415367) Dictyostelium discoideum cDNA clone:ddv22h09, 5' ...  1170   0.0    1
(BJ416101) Dictyostelium discoideum cDNA clone:ddv24p20, 5' ...  1168   0.0    1
(BJ415610) Dictyostelium discoideum cDNA clone:ddv23j03, 5' ...  1168   0.0    1
(BJ415277) Dictyostelium discoideum cDNA clone:ddv22f01, 5' ...  1168   0.0    1
dna update 2009. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   412   e-114
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   412   e-114
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   412   e-114
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   411   e-114
AY294152_1(AY294152|pid:none) Mayorella sp. JJP-2003 actin mRNA,...   410   e-113
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   407   e-112
AF082863_1(AF082863|pid:none) Dreissena polymorpha cytoplasmic a...   406   e-112
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   406   e-112
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        406   e-112
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          406   e-112
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SLC751 is nuc
5' end seq. ID SLC751F
5' end seq. 
>SLC751F.Seq
GAAGATGTTCAAGCTTTAGTTATCGATAACGGTTCTGGTATGTGTAAAGCCGGTTTTGCT
GGTGATGATGCCCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGT
GTTATGGTCGGTATGGGTCAANNNNACTCATATGTAGGTGATGAAGCCCAATCAAAGAGA
GGTATCTTAACCCTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGATGATATG
GAAAAAATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCCCCAGAAGAACACCCA
GTTCTCTTAACTGAAGCCCCATTAAATCCAAAGGCCAACAGAGAAAAAATGACCCAAATT
ATGTTTGAAACCTTCAACACCCCAGCCATGTACGTCGCCATTCAAGCCGTCTTATCCTTA
TATGCCTCTGGTCGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTCTCCCACACT
GTACCAATCTATGAAGGTTATGCTTTACCACATGCCATCTTACGTTTAGATTTAGCTGGT
CGTGATCTTACCGATTACATGATGAAAATTTTAACTGAACGTGGTTACTCATTCACCACC
ACTGCCGAAAGAG----------
Length of 5' end seq. 613
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -