SLC739
Library SL
(Link to library)
Clone ID SLC739
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SLC739Z
(Link to Original site)
Representative DNA sequence
>SLC739 (SLC739Q) /CSM/SL/SLC7-B/SLC739Q.Seq.d/
XXXXXXXXXXTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTC
AAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGC
TTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTC
AGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAAT
AAAACTTTGATCAAAAAAAAAAAAA
sequence update 1998. 5.13
Translated Amino Acid sequence
---QPIVALPPHHHQAVLLQVPLQVNHQVAPLQVVLHPLLQVALHPLPQVVLHHHQLQVQ
LHHQLQAQKAQKAHQPLHK*nfdqkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---QPIVALPPHHHQAVLLQVPLQVNHQVAPLQVVLHPLLQVALHPLPQVVLHHHQLQVQ
LHHQLQAQKAQKAHQPLHK*nfdqkkk


Frame B:
---sr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*rsilclk*csiiisfkfs
ciiscklrklrklishfinktlikkkk


Frame C:
---adssaassspsssaassaassepsssaasssapssasssapssasssapsssasssa
assaassessesssats*ikl*skkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM821 (SSM821Q) /CSM/SS/SSM8-A/SSM821Q.Seq.d/ 480 e-135
SSM203 (SSM203Q) /CSM/SS/SSM2-A/SSM203Q.Seq.d/ 480 e-135
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/ 480 e-135
SSG344 (SSG344Q) /CSM/SS/SSG3-B/SSG344Q.Seq.d/ 480 e-135
SLK616 (SLK616Q) /CSM/SL/SLK6-A/SLK616Q.Seq.d/ 480 e-135
SLJ667 (SLJ667Q) /CSM/SL/SLJ6-C/SLJ667Q.Seq.d/ 480 e-135
SLJ215 (SLJ215Q) /CSM/SL/SLJ2-A/SLJ215Q.Seq.d/ 480 e-135
SLI751 (SLI751Q) /CSM/SL/SLI7-C/SLI751Q.Seq.d/ 480 e-135
SLI612 (SLI612Q) /CSM/SL/SLI6-A/SLI612Q.Seq.d/ 480 e-135
SLI293 (SLI293Q) /CSM/SL/SLI2-D/SLI293Q.Seq.d/ 480 e-135

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(D13973) Dictyostelium discoideum gene for Dp87 protein, com... 480 e-131 1
(AU053777) Dictyostelium discoideum slug cDNA, clone SLJ667. 480 e-131 1
(AU053604) Dictyostelium discoideum slug cDNA, clone SLJ215. 480 e-131 1
(AU053487) Dictyostelium discoideum slug cDNA, clone SLI751. 480 e-131 1
(AU053417) Dictyostelium discoideum slug cDNA, clone SLI612. 480 e-131 1
(AU053272) Dictyostelium discoideum slug cDNA, clone SLI293. 480 e-131 1
(AU053254) Dictyostelium discoideum slug cDNA, clone SLI237. 480 e-131 1
(AU053224) Dictyostelium discoideum slug cDNA, clone SLI174. 480 e-131 1
(AU053164) Dictyostelium discoideum slug cDNA, clone SLF851. 480 e-131 1
(AU053125) Dictyostelium discoideum slug cDNA, clone SLF764. 480 e-131 1
dna update 2009. 3. 8
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 144,320,913
protein update 2009. 6. 2
PSORT

psg: 0.75 gvh: 0.45 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for SLC739 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC739Z
3' end seq.
>SLC739Z.Seq
----------TCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTC
AAGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGC
TTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTC
AGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAAT
AAAACTTTGATCAAAAAAAAAAAAA
Length of 3' end seq. 255
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -