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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC738
Library SL
(Link to library)
Clone ID SLC738
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13927-1
Original site URL
Representative seq. ID SLC738P
(Link to Original site)
Representative DNA sequence 
>SLC738 (SLC738Q) /CSM/SL/SLC7-B/SLC738Q.Seq.d/
AACAAACTAGAAATGTCTAAAGATACAACAGTTTCATTAGAACAACTCTTTAAAGAGTTA
GATGAATATATCATAAATTCACAATTTAAAAAAGCAATTCGTGTTTGTAATAAAATTTTA
TCAGTAAATGGTAATGATTCAGAAGCATTCCAATGTAAAGTAATTTGTTTAATGCAACTT
AGTAATTTTACAGAAGCAATTGAATGTTTTAAAAAACCAGAACAAATTCAATCAATGCAA
TTCGAATATTCATATTGTCTTTATTCAACTGCAAAATATCAAGAAGCATTAACTCAATTA
GAAAAGCAATCATCAAAAGAAACTAAATCTTTAGAACTTGAAGCTCAAATCTACTACAAA
TTAGAAAATTATCAAAAAACAATTTCAATTTATGAAAGTTTATTATCAAAACCAGGTTAT
TCAGATTCAATTGAATTTATTACCAATCTTTGTGCAGTTTATTTAGATGCAGGTAAATTC
AATGAATGTCAAGAATTATTAAXXXXXXXXXXACAAGTTGATACATCATTCGTTGAAGAT
TTAGATATTATTCAAGTTTCATTATTAATTAAAGAAAAGAAATTTAAAGATGCAGAGAAA
TTATTATTAAAGAATAATACTACTACTGGTTCAATTAAATCACAATTATTATTAGCACAA
ATTTATTTATTGGATAATAATAATGTTGCAAAGGCATTGAATGTTTTGGAGAAATTAGAT
TCATCAGTTTCATTGAGACCTGGTATTGTCGCTACAAAGGTTGCATTGTATGAAAAATCG
GGTGATTTAGAAAAGGCAGTCAATAGTTTAGATGATTTAATCTCAATTTTTGATAAACAA
AAGAAATCTGAAAAAGATGAAGAGATTTATGTTAACCTTTTGAAAGCAAGTGGTAACTTT
AAATTAAAACATCATAAATATAGAGAAGCCTCTGATATGTTTGATAGAGTATTAAAGATT
AATCCAAATGATTTAATAGCTTTACCATCTTACATTGTTGCCACTTCACATTTCGATCCA
TCTTTATCTCAAAAGTATGAAGGTAAATTACCAAATATTAAATTTGAATCTAAAATTGCT
ATTGATTTCATTGACAAGTATGGTTTAACTTTTGAAAAGAAATTAAATTTAAATGAAGAT
TCAAATTCATCATCACCAACAACAACAACTACTACTACTACCAAATCTACCAAACCAACT
GCAACAGAAGTTGTTAAAATTAAGAAATCTAAAAAGAAATTACCAAAAGTANTGAAACCA
AATTATGTTCCAGACCCAGGTCGTTGGTTACCAAAATGGCAACGTGCAAATGCTAAAGCT
GCAAGAAGTAAAAAGAATAAGGATATCATTAAAGGTCCACAAGGTATTGCATCTGCTTCT
CAAACTGCTTCACTCTTTGTTCAAGAATCAAAAAATACAAATACAAACAATAACAATACT
CAATCTTCTAAATCTGAAAAACCAAGAAACATTCATAAAAAGAAATCAAAAAAATAGATA
ATTAATAATATTTAAATAATATAAAATAAAATA
sequence update 2002. 8. 2
Translated Amino Acid sequence 
NKLEMSKDTTVSLEQLFKELDEYIINSQFKKAIRVCNKILSVNGNDSEAFQCKVICLMQL
SNFTEAIECFKKPEQIQSMQFEYSYCLYSTAKYQEALTQLEKQSSKETKSLELEAQIYYK
LENYQKTISIYESLLSKPGYSDSIEFITNLCAVYLDAGKFNECQELL---

---QVDTSFVEDLDIIQVSLLIKEKKFKDAEKLLLKNNTTTGSIKSQLLLAQIYLLDNNN
VAKALNVLEKLDSSVSLRPGIVATKVALYEKSGDLEKAVNSLDDLISIFDKQKKSEKDEE
IYVNLLKASGNFKLKHHKYREASDMFDRVLKINPNDLIALPSYIVATSHFDPSLSQKYEG
KLPNIKFESKIAIDFIDKYGLTFEKKLNLNEDSNSSSPTTTTTTTTKSTKPTATEVVKIK
KSKKKLPKVXKPNYVPDPGRWLPKWQRANAKAARSKKNKDIIKGPQGIASASQTASLFVQ
ESKNTNTNNNNTQSSKSEKPRNIHKKKSKK*iinni*ii*nki
Translated Amino Acid sequence (All Frames) 
Frame A:
NKLEMSKDTTVSLEQLFKELDEYIINSQFKKAIRVCNKILSVNGNDSEAFQCKVICLMQL
SNFTEAIECFKKPEQIQSMQFEYSYCLYSTAKYQEALTQLEKQSSKETKSLELEAQIYYK
LENYQKTISIYESLLSKPGYSDSIEFITNLCAVYLDAGKFNECQELL---

---ts*yiir*rfryyssfiin*rkei*rcreiiike*yyywfn*itiiistnlfig***
cckgiecfgeirfisfietwycrykgciv*kig*frkgsq*fr*fnlnf**tkei*kr*r
dlc*pfeskw*l*ikts*i*rsl*yv**sikd*sk*fnsftilhcchftfrsifiskv*r
*itky*i*i*ncy*fh*qvwfnf*keikfk*rfkfiitnnnnyyyyqiyqtncnrsc*n*
ei*keitksxetklcsrprslvtkmatckc*sckk*ke*gyh*rstrycicfsncftlcs
rikkykykq*qysif*i*ktkkhs*keikkidn**ylnnik*n

Frame B:
tn*kclkiqqfh*nnslks*mnis*ihnlkkqfvfvikfyq*mvmiqkhsnvk*fv*cnl
vilqkqlnvlknqnkfnqcnsnihivfiqlqnikkh*ln*ksnhqkklnl*nlklksttn
*kiikkqfqfmkvyyqnqviqiqlnllpifvqfi*mqvnsmnvkny*---

---QVDTSFVEDLDIIQVSLLIKEKKFKDAEKLLLKNNTTTGSIKSQLLLAQIYLLDNNN
VAKALNVLEKLDSSVSLRPGIVATKVALYEKSGDLEKAVNSLDDLISIFDKQKKSEKDEE
IYVNLLKASGNFKLKHHKYREASDMFDRVLKINPNDLIALPSYIVATSHFDPSLSQKYEG
KLPNIKFESKIAIDFIDKYGLTFEKKLNLNEDSNSSSPTTTTTTTTKSTKPTATEVVKIK
KSKKKLPKVXKPNYVPDPGRWLPKWQRANAKAARSKKNKDIIKGPQGIASASQTASLFVQ
ESKNTNTNNNNTQSSKSEKPRNIHKKKSKK*iinni*ii*nki

Frame C:
qtrnv*rynsfirttl*rvr*iyhkfti*ksnscl**nfiskw**frsipm*snlfnat*
*fyrsn*mf*ktrtnsinairifilslfnckisrsinsirkaiikrn*ifrt*ssnllqi
rklsknnfnl*kfiiktrlfrfn*iyyqslcslfrcr*iq*msrii---

---klihhslki*ilfkfhy*lkkrnlkmqrnyy*riilllvqlnhnyy*hkfiywiiim
lqrh*mfwrn*ihqfh*dlvlslqrlhcmknrvi*krqsiv*mi*sqflinkrnlkkmkr
fmltf*kqvvtln*niiniekplicliey*rliqmi**lyhltllplhisihlylksmkv
nyqilnlnlklllisltsmv*llkrn*i*mkiqihhhqqqqllllpnlpnqlqqkllklr
nlkrnyqkx*nqimfqtqvvgyqngnvqmlklqevkririslkvhkvlhlllkllhslfk
nqkiqiqtitilnllnlknqetfikrnqknr*liifk*ykik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC738 (SLC738Q) /CSM/SL/SLC7-B/SLC738Q.Seq.d/                       2857   0.0
VHI102 (VHI102Q) /CSM/VH/VHI1-A/VHI102Q.Seq.d/                       1457   0.0
AHM891 (AHM891Q) /CSM/AH/AHM8-D/AHM891Q.Seq.d/                       1396   0.0
VHI373 (VHI373Q) /CSM/VH/VHI3-D/VHI373Q.Seq.d/                       1354   0.0
VHD639 (VHD639Q) /CSM/VH/VHD6-B/VHD639Q.Seq.d/                       1334   0.0
VHI339 (VHI339Q) /CSM/VH/VHI3-B/VHI339Q.Seq.d/                       1316   0.0
VHM681 (VHM681Q) /CSM/VH/VHM6-D/VHM681Q.Seq.d/                       1314   0.0
VHC658 (VHC658Q) /CSM/VH/VHC6-C/VHC658Q.Seq.d/                       1308   0.0
AFM550 (AFM550Q) /CSM/AF/AFM5-C/AFM550Q.Seq.d/                       1304   0.0
AFN707 (AFN707Q) /CSM/AF/AFN7-A/AFN707Q.Seq.d/                       1100   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    46   5e-17  25
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    50   4e-14  24
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    34   4e-13  18
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    44   4e-12  22
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   1e-11  23
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    36   2e-11  25
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    34   3e-11  20
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    36   3e-11  26
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   3e-11  23
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   6e-11  23
dna update 2003.11.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54EP7) RecName: Full=Signal recognition particle 72 kDa protei...   492   e-137
BX537991_1(BX537991|pid:none) Homo sapiens mRNA; cDNA DKFZp686A0...   101   8e-20
AM469931_2(AM469931|pid:none) Vitis vinifera contig VV78X156664....    95   6e-18
BC019196_1(BC019196|pid:none) Mus musculus signal recognition pa...    93   3e-17
AK138875_1(AK138875|pid:none) Mus musculus 0 day neonate thymus ...    93   3e-17
BC141425_1(BC141425|pid:none) Synthetic construct Mus musculus c...    93   3e-17
AK133784_1(AK133784|pid:none) Mus musculus 8 days embryo whole b...    93   3e-17
BC017057_1(BC017057|pid:none) Homo sapiens signal recognition pa...    91   8e-17
BC032609_1(BC032609|pid:none) Homo sapiens signal recognition pa...    91   8e-17
(P33731) RecName: Full=Signal recognition particle 72 kDa protei...    91   8e-17
protein update 2009. 6. 2
PSORT 

 psg: 0.74  gvh: 0.40  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.67  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SLC738 is cyt
5' end seq. ID SLC738F
5' end seq. 
>SLC738F.Seq
AACAAACTAGAAATGTCTAAAGATACAACAGTTTCATTAGAACAACTCTTTAAAGAGTTA
GATGAATATATCATAAATTCACAATTTAAAAAAGCAATTCGTGTTTGTAATAAAATTTTA
TCAGTAAATGGTAATGATTCAGAAGCATTCCAATGTAAAGTAATTTGTTTAATGCAACTT
AGTAATTTTACAGAAGCAATTGAATGTTTTAAAAAACCAGAACAAATTCAATCAATGCAA
TTCGAATATTCATATTGTCTTTATTCAACTGCAAAATATCAAGAAGCATTAACTCAATTA
GAAAAGCAATCATCAAAAGAAACTAAATCTTTAGAACTTGAAGCTCAAATCTACTACAAA
TTAGAAAATTATCAAAAAACAATTTCAATTTATGAAAGTTTATTATCAAAACCAGGTTAT
TCAGATTCAATTGAATTTATTACCAATCTTTGTGCAGTTTATTTAGATGCAGGTAAATTC
AATGAATGTCAAGAATTATTAA----------
Length of 5' end seq. 502
3' end seq. ID SLC738Z
3' end seq. 
>SLC738Z.Seq
NNNNNNNNNNACAAGTTGATACATCATTCGTTGAAGATTTAGATATTATTCAAGTTTCAT
TATTAATTAAAGAAAAGAAATTTAAAGATGCAGAGAAATTATTATTAAAGAATAATACTA
CTACTGGTTCAATTAAATCACAATTATTATTAGCACAAATTTATTTATTGGATAATAATA
ATGTTGCAAAGGCATTGAATGTTTTGGAGAAATTAGATTCATCAGTTTCATTGAGACCTG
GTATTGTCGCTACAAAGGTTGCATTGTATGAAAAATCGGGTGATTTAGAAAAGGCAGTCA
ATAGTTTAGATGATTTAATCTCAATTTTTGATAAACAAAAGAAATCTGAAAAAGATGAAG
AGATTTATGTTAACCTTTTGAAAGCAAGTGGTAACTTTAAATTAAAACATCATAAATATA
GAGAAGCCTCTGATATGTTTGATAGAGTATTAAAGATTAATCCAAATGATTTAATAGCTT
TACCATCTTACATTGTTGCCACTTCACATTTCGATCCATCTTTATCTCAAAAGTATGAAG
GTAAATTACCAAATATTAAATTTGAATCTAAAATTGCTATTGATTTCATTGACAAGTATG
GTTTAACTTTTGAAAAGAAATTAAATTTAAATGAAGATTCAAATTCATCATCACCAACAA
CAACAACTACTACTACTACCAAATCTACCAAACCAACTGCAACAGAAGTTGTTAAAATTA
AGAAATCTAAAAAGAAATTACCAAAAGTANTGAAACCAAATTATGTTCCAGACCCAGGTC
GTTGGTTACCAAAATGGCAACGTGCAAATGCTAAAGCTGCAAGAAGTAAAAAGAATAAGG
ATATCATTAAAGGTCCACAAGGTATTGCATCTGCTTCTCAAACTGCTTCACTCTTTGTTC
AAGAATCAAAAAATACAAATACAAACAATAACAATACTCAATCTTCTAAATCTGAAAAAC
CAAGAAACATTCATAAAAAGAAATCAAAAAAATAGATAATTAATAATATTTAAATAATAT
AAAATAAAATA
Length of 3' end seq. 1031
Connected seq. ID SLC738P
Connected seq. 
>SLC738P.Seq
AACAAACTAGAAATGTCTAAAGATACAACAGTTTCATTAGAACAACTCTTTAAAGAGTTA
GATGAATATATCATAAATTCACAATTTAAAAAAGCAATTCGTGTTTGTAATAAAATTTTA
TCAGTAAATGGTAATGATTCAGAAGCATTCCAATGTAAAGTAATTTGTTTAATGCAACTT
AGTAATTTTACAGAAGCAATTGAATGTTTTAAAAAACCAGAACAAATTCAATCAATGCAA
TTCGAATATTCATATTGTCTTTATTCAACTGCAAAATATCAAGAAGCATTAACTCAATTA
GAAAAGCAATCATCAAAAGAAACTAAATCTTTAGAACTTGAAGCTCAAATCTACTACAAA
TTAGAAAATTATCAAAAAACAATTTCAATTTATGAAAGTTTATTATCAAAACCAGGTTAT
TCAGATTCAATTGAATTTATTACCAATCTTTGTGCAGTTTATTTAGATGCAGGTAAATTC
AATGAATGTCAAGAATTATTAA----------ACAAGTTGATACATCATTCGTTGAAGAT
TTAGATATTATTCAAGTTTCATTATTAATTAAAGAAAAGAAATTTAAAGATGCAGAGAAA
TTATTATTAAAGAATAATACTACTACTGGTTCAATTAAATCACAATTATTATTAGCACAA
ATTTATTTATTGGATAATAATAATGTTGCAAAGGCATTGAATGTTTTGGAGAAATTAGAT
TCATCAGTTTCATTGAGACCTGGTATTGTCGCTACAAAGGTTGCATTGTATGAAAAATCG
GGTGATTTAGAAAAGGCAGTCAATAGTTTAGATGATTTAATCTCAATTTTTGATAAACAA
AAGAAATCTGAAAAAGATGAAGAGATTTATGTTAACCTTTTGAAAGCAAGTGGTAACTTT
AAATTAAAACATCATAAATATAGAGAAGCCTCTGATATGTTTGATAGAGTATTAAAGATT
AATCCAAATGATTTAATAGCTTTACCATCTTACATTGTTGCCACTTCACATTTCGATCCA
TCTTTATCTCAAAAGTATGAAGGTAAATTACCAAATATTAAATTTGAATCTAAAATTGCT
ATTGATTTCATTGACAAGTATGGTTTAACTTTTGAAAAGAAATTAAATTTAAATGAAGAT
TCAAATTCATCATCACCAACAACAACAACTACTACTACTACCAAATCTACCAAACCAACT
GCAACAGAAGTTGTTAAAATTAAGAAATCTAAAAAGAAATTACCAAAAGTANTGAAACCA
AATTATGTTCCAGACCCAGGTCGTTGGTTACCAAAATGGCAACGTGCAAATGCTAAAGCT
GCAAGAAGTAAAAAGAATAAGGATATCATTAAAGGTCCACAAGGTATTGCATCTGCTTCT
CAAACTGCTTCACTCTTTGTTCAAGAATCAAAAAATACAAATACAAACAATAACAATACT
CAATCTTCTAAATCTGAAAAACCAAGAAACATTCATAAAAAGAAATCAAAAAAATAGATA
ATTAATAATATTTAAATAATATAAAATAAAATA
Length of connected seq. 1523
Full length Seq ID -
Full length Seq. -
Length of full length seq. -