SLC729
Library SL
(Link to library)
Clone ID SLC729
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14971-1
Original site URL
Representative seq. ID SLC729Z
(Link to Original site)
Representative DNA sequence
>SLC729 (SLC729Q) /CSM/SL/SLC7-B/SLC729Q.Seq.d/
XXXXXXXXXXAAAATATCTTTATGTTGCCAATGCTGGTGATGCCCGTGCAGTTGTTTGTC
ATAATAAAGTTGCAGAAAGATTATCATACGATCATAAAGGATCTGATCCAGAAGAAGTAA
AACGTATTGATGCTGCAGGTGGTTTTGTATGTAATGGTCGTGTTAATGGTATTCTCGCTG
TAACCCGTTCACTTGGTGATCACTCAATGAAAGATCATGTCATTGGTGACCCATATAAAC
GTTCAATTAAATTAGATTCTGGTCATACTCATTTAATTTTAGCTTGTGATGGTCTTTGGG
ATGTTACAAGTGACCAAGATGCAGTGGACCTTATTTTAAATGAAACTGAAGCACAAAAGA
TGAGTGATAAATTATTATTACATGCATTAAAGAAAGGAAGTACCGATAACATTAGTATTA
TCGTTGTTATTTTGTAAGAAAAGAAAACTAAAACCTCAACCATAACATCACACATATCAC
AACAAATCATATCAACAATAAACAACCAAAAACAACACAACAATTCAATAACAAAAGCAA
CACAACTCAATAGGTATAATAGAAAATGTTCTAAAGTACAAAAG
sequence update 1998. 5.13
Translated Amino Acid sequence
---KYLYVANAGDARAVVCHNKVAERLSYDHKGSDPEEVKRIDAAGGFVCNGRVNGILAV
TRSLGDHSMKDHVIGDPYKRSIKLDSGHTHLILACDGLWDVTSDQDAVDLILNETEAQKM
SDKLLLHALKKGSTDNISIIVVIL*ekktktstitshisqqiistinnqkqhnnsitkat
qlnrynrkcskvqk


Translated Amino Acid sequence (All Frames)
Frame A:
---KYLYVANAGDARAVVCHNKVAERLSYDHKGSDPEEVKRIDAAGGFVCNGRVNGILAV
TRSLGDHSMKDHVIGDPYKRSIKLDSGHTHLILACDGLWDVTSDQDAVDLILNETEAQKM
SDKLLLHALKKGSTDNISIIVVIL*ekktktstitshisqqiistinnqkqhnnsitkat
qlnrynrkcskvqk


Frame B:
---nifmlpmlvmpvqlfviiklqkdyhtiikdliqkk*nvlmlqvvlyvmvvlmvfsl*
pvhlvitq*kimslvthinvqln*ilvili*f*lvmvfgmlqvtkmqwtlf*mklkhkr*
vinyyymh*rkevpitlvlsllfckkrklkpqp*hhtyhnksyqq*ttknnttiq*qkqh
nsigiienvlkyk


Frame C:
---islccqcw*cpcscls**scrkiiirs*ri*srrskty*ccrwfcm*wsc*wysrcn
pftw*slnerschw*pi*tfn*irfwsysfnfsl*wslgcyk*prcsgpyfk*n*stkde
**iiitcikerkyr*h*yyrcyfvrken*nlnhnithittnhinnkqpkttqqfnnksnt
tq*v**kmf*stk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH325 (SLH325Q) /CSM/SL/SLH3-B/SLH325Q.Seq.d/ 932 0.0
SLE469 (SLE469Q) /CSM/SL/SLE4-C/SLE469Q.Seq.d/ 932 0.0
SLC729 (SLC729Q) /CSM/SL/SLC7-B/SLC729Q.Seq.d/ 932 0.0
SLC184 (SLC184Q) /CSM/SL/SLC1-D/SLC184Q.Seq.d/ 932 0.0
SFK807 (SFK807Q) /CSM/SF/SFK8-A/SFK807Q.Seq.d/ 932 0.0
SFF243 (SFF243Q) /CSM/SF/SFF2-B/SFF243Q.Seq.d/ 932 0.0
FC-AH17 (FC-AH17Q) /CSM/FC/FC-AH/FC-AH17Q.Seq.d/ 932 0.0
CFF291 (CFF291Q) /CSM/CF/CFF2-D/CFF291Q.Seq.d/ 932 0.0
CHE762 (CHE762Q) /CSM/CH/CHE7-C/CHE762Q.Seq.d/ 924 0.0
VFI716 (VFI716Q) /CSM/VF/VFI7-A/VFI716Q.Seq.d/ 918 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034349) Dictyostelium discoideum slug cDNA, clone SLC729. 870 0.0 2
(AU035000) Dictyostelium discoideum slug cDNA, clone SLE469. 870 0.0 2
(AU034469) Dictyostelium discoideum slug cDNA, clone SLC184. 870 0.0 2
(AU039274) Dictyostelium discoideum slug cDNA, clone SLH325. 870 0.0 2
(C23767) Dictyostelium discoideum gamete cDNA, clone FC-AH17. 870 0.0 2
(BJ372237) Dictyostelium discoideum cDNA clone:ddc11e24, 3' ... 870 0.0 2
(AU034463) Dictyostelium discoideum slug cDNA, clone SLC171. 854 0.0 2
(BJ401114) Dictyostelium discoideum cDNA clone:dds22n02, 3' ... 870 0.0 2
(AU033806) Dictyostelium discoideum slug cDNA, clone SLB463. 839 0.0 2
(BJ398167) Dictyostelium discoideum cDNA clone:dds11e12, 3' ... 870 0.0 1
dna update 2009. 3. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017341_470(AE017341|pid:none) Cryptococcus neoformans var. neo... 164 1e-39
AM270324_15(AM270324|pid:none) Aspergillus niger contig An14c017... 150 2e-35
AP007166_406(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 147 2e-34
CU633900_497(CU633900|pid:none) Podospora anserina genomic DNA c... 147 3e-34
(P35182) RecName: Full=Protein phosphatase 2C homolog 1; ... 140 2e-32
(P40371) RecName: Full=Protein phosphatase 2C homolog 1; ... 139 7e-32
CR380949_181(CR380949|pid:none) Candida glabrata strain CBS138 c... 136 4e-31
AE016818_337(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 136 4e-31
CR382126_637(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 128 1e-28
CR382130_886(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 128 1e-28
protein update 2009. 6. 2
PSORT

psg: 0.65 gvh: 0.43 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for SLC729 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC729Z
3' end seq.
>SLC729Z.Seq
----------AAAATATCTTTATGTTGCCAATGCTGGTGATGCCCGTGCAGTTGTTTGTC
ATAATAAAGTTGCAGAAAGATTATCATACGATCATAAAGGATCTGATCCAGAAGAAGTAA
AACGTATTGATGCTGCAGGTGGTTTTGTATGTAATGGTCGTGTTAATGGTATTCTCGCTG
TAACCCGTTCACTTGGTGATCACTCAATGAAAGATCATGTCATTGGTGACCCATATAAAC
GTTCAATTAAATTAGATTCTGGTCATACTCATTTAATTTTAGCTTGTGATGGTCTTTGGG
ATGTTACAAGTGACCAAGATGCAGTGGACCTTATTTTAAATGAAACTGAAGCACAAAAGA
TGAGTGATAAATTATTATTACATGCATTAAAGAAAGGAAGTACCGATAACATTAGTATTA
TCGTTGTTATTTTGTAAGAAAAGAAAACTAAAACCTCAACCATAACATCACACATATCAC
AACAAATCATATCAACAATAAACAACCAAAAACAACACAACAATTCAATAACAAAAGCAA
CACAACTCAATAGGTATAATAGAAAATGTTCTAAAGTACAAAAG
Length of 3' end seq. 574
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -