SLC727
Library SL
(Link to library)
Clone ID SLC727
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16249-1
Original site URL
Representative seq. ID SLC727Z
(Link to Original site)
Representative DNA sequence
>SLC727 (SLC727Q) /CSM/SL/SLC7-B/SLC727Q.Seq.d/
XXXXXXXXXXATATTATATTTTTGGTGATAATGGTGTCAGATGTGTCACTACCCCATGTG
CATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTGATATACTCA
TGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGATCTAAAACAG
TTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAATTACAA
TATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGCCATTAT
TAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTTGTTTAGCTT
CTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTCCAGCAGGTT
ATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATTATTGTGATC
CAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTGTAA
AAAAAAAAAAAATAAAAAAAAAATAAACACCTCCTTTTTTATTATTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 5.13
Translated Amino Acid sequence
---YYIFGDNGVRCVTTPCASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTV
RSDDYGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLAS
PTCTQSSFCTLGMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*tivk
kkkikkk*tppflllkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---YYIFGDNGVRCVTTPCASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSKTV
RSDDYGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCLAS
PTCTQSSFCTLGMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*tivk
kkkikkk*tppflllkkkkkkkkkkkkk


Frame B:
---iiflvimvsdvslphvhqqmqfy*isvlnkllviyschiqrtlvnililhg*dlkql
dqmtmv*svkvhsvveklqyqmlsfiyqiqlvnvihchy*nvqvvrl*htlvmkivv*ll
qlalnlhsvpwvchfvqqviv*inseqlkqmdvqniiviqplfvkhinfffc*fskql*k
kkk*kknkhllfyy*kkkkkkkkkkkk


Frame C:
---lyfw**wcqmchypmcinrcsfieypy*tnc**ythaifkerw*if*fcmvri*ns*
ir*lwfnrsryiq*wknynikcfhsftrsnw*m*fiaiikmsrwfdydils**kslfsfs
nlhsifilylgyatlssrlsfrsiqsn*skwmskill*snlcl*ntlisffvnflnnckk
kknkkkintsffiikkkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM524 (SSM524Q) /CSM/SS/SSM5-A/SSM524Q.Seq.d/ 1005 0.0
SSM411 (SSM411Q) /CSM/SS/SSM4-A/SSM411Q.Seq.d/ 1005 0.0
SSM285 (SSM285Q) /CSM/SS/SSM2-D/SSM285Q.Seq.d/ 1005 0.0
SSM240 (SSM240Q) /CSM/SS/SSM2-B/SSM240Q.Seq.d/ 1005 0.0
SSK489 (SSK489Q) /CSM/SS/SSK4-D/SSK489Q.Seq.d/ 1005 0.0
SSK447 (SSK447Q) /CSM/SS/SSK4-B/SSK447Q.Seq.d/ 1005 0.0
SSJ893 (SSJ893Q) /CSM/SS/SSJ8-D/SSJ893Q.Seq.d/ 1005 0.0
SSJ224 (SSJ224Q) /CSM/SS/SSJ2-A/SSJ224Q.Seq.d/ 1005 0.0
SSI834 (SSI834Q) /CSM/SS/SSI8-B/SSI834Q.Seq.d/ 1005 0.0
SSI294 (SSI294Q) /CSM/SS/SSI2-D/SSI294Q.Seq.d/ 1005 0.0

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052824) Dictyostelium discoideum slug cDNA, clone SLF169. 1047 0.0 1
(AU039119) Dictyostelium discoideum slug cDNA, clone SSM411. 1047 0.0 1
(AU039022) Dictyostelium discoideum slug cDNA, clone SSM285. 1047 0.0 1
(AU038984) Dictyostelium discoideum slug cDNA, clone SSM240. 1047 0.0 1
(AU037935) Dictyostelium discoideum slug cDNA, clone SSE470. 1047 0.0 1
(AU034814) Dictyostelium discoideum slug cDNA, clone SLE537. 1047 0.0 1
(AU034347) Dictyostelium discoideum slug cDNA, clone SLC727. 1047 0.0 1
(C93285) Dictyostelium discoideum slug cDNA, clone SSM524. 1047 0.0 1
(C93026) Dictyostelium discoideum slug cDNA, clone SSF491. 1047 0.0 1
(C92614) Dictyostelium discoideum slug cDNA, clone SSF318. 1047 0.0 1
dna update 2009. 3. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos... 352 6e-96
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos... 220 3e-56
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos... 151 1e-35
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom... 78 2e-13
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re... 43 0.006
CP001037_1830(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 41 0.023
AL033501_6(AL033501|pid:none) C.albicans cosmid Ca41C10. &T1823... 37 0.44
CP000934_2920(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 36 0.98
FM992688_766(FM992688|pid:none) Candida dubliniensis CD36 chromo... 35 1.7
AB267386_1(AB267386|pid:none) Nepenthes alata NaTLP1c mRNA for t... 34 2.8
protein update 2009. 6. 2
PSORT

psg: 0.87 gvh: 0.40 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: cytoplasmic
20.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLC727 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC727Z
3' end seq.
>SLC727Z.Seq
----------ATATTATATTTTTGGTGATAATGGTGTCAGATGTGTCACTACCCCATGTG
CATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTGATATACTCA
TGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGATCTAAAACAG
TTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAATTACAA
TATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGCCATTAT
TAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTTGTTTAGCTT
CTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTCCAGCAGGTT
ATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATTATTGTGATC
CAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTGTAA
AAAAAAAAAAAATAAAAAAAAAATAAACACCTCCTTTTTTATTATTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 616
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -