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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC725
Library SL
(Link to library)
Clone ID SLC725
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16445-1
Original site URL
Representative seq. ID SLC725Z
(Link to Original site)
Representative DNA sequence 
>SLC725 (SLC725Q) /CSM/SL/SLC7-B/SLC725Q.Seq.d/
XXXXXXXXXXAAAATTCTGCATTTGGGGTAACCACTTTGCCACCCAATACCCAGATATTA
ACTTTGGTACCGTCAAAGGTAAATCACTCGTAGATACCATCAACGATCAAAAATGGGTTA
AAGATAACTTTATTCCAACCGTTCAACAAAGAGGTGCCGCTATTATTGCTGCCCGTGGTT
TATCATCAGCTGCCTCTGCTGCTTCAGCTGCCATCGATCACATGAGAGATTGGACCTATG
GTACCAATGGTCAATGGACCTCTATGGCCATTTACTCTGAAGGTGAATATGGTGCCGATA
AAGGTCTCTACTTCTCTTTCCCAGTCATTGTAGATAACAAAGGTAAATACGAAATCGTTA
AAGGTCTTAAACTTGATCAATTCTCTCAAGAACGTTTCGATGCTACTCGTAAAGAATTAT
TATCAGAAATGGATGGTGTTAAAGAATTATTACCATAAATTAAATTTTAAAAATAAAAAT
AATAAATTTTTTTTAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
sequence update 1998. 5.13
Translated Amino Acid sequence 
---KFCIWGNHFATQYPDINFGTVKGKSLVDTINDQKWVKDNFIPTVQQRGAAIIAARGL
SSAASAASAAIDHMRDWTYGTNGQWTSMAIYSEGEYGADKGLYFSFPVIVDNKGKYEIVK
GLKLDQFSQERFDATRKELLSEMDGVKELLP*ikf*k*k**iffkkkkk*kkkkkkkkkk
kk
Translated Amino Acid sequence (All Frames) 
Frame A:
---KFCIWGNHFATQYPDINFGTVKGKSLVDTINDQKWVKDNFIPTVQQRGAAIIAARGL
SSAASAASAAIDHMRDWTYGTNGQWTSMAIYSEGEYGADKGLYFSFPVIVDNKGKYEIVK
GLKLDQFSQERFDATRKELLSEMDGVKELLP*ikf*k*k**iffkkkkk*kkkkkkkkkk
kk


Frame B:
---nsafgvttlppntqiltlvpskvnhs*ipstiknglkitlfqpfnkevpllllpvvy
hqlplllqlpsit*eigpmvpmvngplwpftlkvnmvpikvstslsqsl*itkvntkslk
vlnlinslknvsmllvknyyqkwmvlknyyhklnfknknnkfflkkkknkkkkkkkkkkk
k


Frame C:
---ilhlg*plchpipry*lwyrqr*itrryhqrskmg*r*lysnrstkrcryyccpwfi
isclccfschrsherldlwyqwsmdlyghll*r*iwcr*rslllfpshcr*qr*irnr*r
s*t*silsrtfrcys*riiirngwc*riitin*ilkikiinff*kkkkikkkkkkkkkkk
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC725 (SLC725Q) /CSM/SL/SLC7-B/SLC725Q.Seq.d/                        959   0.0
SLD454 (SLD454Q) /CSM/SL/SLD4-C/SLD454Q.Seq.d/                        952   0.0
SLD382 (SLD382Q) /CSM/SL/SLD3-D/SLD382Q.Seq.d/                        952   0.0
VSD532 (VSD532Q) /CSM/VS/VSD5-B/VSD532Q.Seq.d/                        926   0.0
SFK802 (SFK802Q) /CSM/SF/SFK8-A/SFK802Q.Seq.d/                        926   0.0
VFI849 (VFI849Q) /CSM/VF/VFI8-C/VFI849Q.Seq.d/                        922   0.0
VFH801 (VFH801Q) /CSM/VF/VFH8-A/VFH801Q.Seq.d/                        922   0.0
VFD443 (VFD443Q) /CSM/VF/VFD4-B/VFD443Q.Seq.d/                        922   0.0
CHD266 (CHD266Q) /CSM/CH/CHD2-C/CHD266Q.Seq.d/                        922   0.0
VSI143 (VSI143Q) /CSM/VS/VSI1-B/VSI143Q.Seq.d/                        916   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034345) Dictyostelium discoideum slug cDNA, clone SLC725.      880   0.0    1
(AU268219) Dictyostelium discoideum vegetative cDNA clone:VS...   872   0.0    1
(AU264190) Dictyostelium discoideum vegetative cDNA clone:VS...   872   0.0    1
(AU052516) Dictyostelium discoideum slug cDNA, clone SLD454.      872   0.0    1
(AU052472) Dictyostelium discoideum slug cDNA, clone SLD382.      872   0.0    1
(BJ434136) Dictyostelium discoideum cDNA clone:ddv16b02, 3' ...   872   0.0    1
(BJ432370) Dictyostelium discoideum cDNA clone:ddv18b14, 3' ...   872   0.0    1
(BJ430454) Dictyostelium discoideum cDNA clone:ddv7f12, 3' e...   872   0.0    1
(BJ430268) Dictyostelium discoideum cDNA clone:ddv6l15, 3' e...   872   0.0    1
(BJ401064) Dictyostelium discoideum cDNA clone:dds22d02, 3' ...   872   0.0    1
dna update 2009. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54D04) RecName: Full=Probable malate dehydrogenase 2, mitochon...   259   3e-68
(A6SY47) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...   145   8e-34
(Q7VW97) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...   144   2e-33
CP001392_2230(CP001392|pid:none) Diaphorobacter sp. TPSY, comple...   140   2e-32
(Q2L068) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...   139   4e-32
(A1W9K7) RecName: Full=Malate dehydrogenase;          EC=1.1.1.37;    139   5e-32
CP000539_2676(CP000539|pid:none) Acidovorax sp. JS42, complete g...   139   5e-32
CP000884_2420(CP000884|pid:none) Delftia acidovorans SPH-1, comp...   137   2e-31
(A1UZ10) RecName: Full=Malate dehydrogenase;          EC=1.1.1.3...   135   7e-31
CP001010_909(CP001010|pid:none) Polynucleobacter necessarius sub...   135   7e-31
protein update 2009. 6. 2
PSORT 

 psg: 0.83  gvh: 0.50  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC725 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC725Z
3' end seq. 
>SLC725Z.Seq
----------AAAATTCTGCATTTGGGGTAACCACTTTGCCACCCAATACCCAGATATTA
ACTTTGGTACCGTCAAAGGTAAATCACTCGTAGATACCATCAACGATCAAAAATGGGTTA
AAGATAACTTTATTCCAACCGTTCAACAAAGAGGTGCCGCTATTATTGCTGCCCGTGGTT
TATCATCAGCTGCCTCTGCTGCTTCAGCTGCCATCGATCACATGAGAGATTGGACCTATG
GTACCAATGGTCAATGGACCTCTATGGCCATTTACTCTGAAGGTGAATATGGTGCCGATA
AAGGTCTCTACTTCTCTTTCCCAGTCATTGTAGATAACAAAGGTAAATACGAAATCGTTA
AAGGTCTTAAACTTGATCAATTCTCTCAAGAACGTTTCGATGCTACTCGTAAAGAATTAT
TATCAGAAATGGATGGTGTTAAAGAATTATTACCATAAATTAAATTTTAAAAATAAAAAT
AATAAATTTTTTTTAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
Length of 3' end seq. 538
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -