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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC720
Library SL
(Link to library)
Clone ID SLC720
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SLC720Z
(Link to Original site)
Representative DNA sequence 
>SLC720 (SLC720Q) /CSM/SL/SLC7-A/SLC720Q.Seq.d/
XXXXXXXXXXGTCCACACTGTCTGCCAATAATGTATTCCCACAACTTTGTAAAGTTACTC
AATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTATTAAAGCAA
GACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGCATGTAATC
ACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTT
GCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAA
CTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAA
CTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTG
CCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTA
GCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAA
GTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAA
GCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTGATC
sequence update 1998. 5.13
Translated Amino Acid sequence 
---STLSANNVFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNH
VGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGT
TTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASS
SAPSSSASSSAASSAASSESSESSSATS*ikl*
Translated Amino Acid sequence (All Frames) 
Frame A:
---STLSANNVFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNH
VGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGT
TTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASS
SAPSSSASSSAASSAASSESSESSSATS*ikl*


Frame B:
---phclpimyshnfvkllnvqlislvk*leviqlvlkqdhryhhhiaqlvqsyhqhvit
le*fvfkyqaivpildshvahliqfvfihqllllqplqqlhqlsqlqplqllqvqqlvel
qlvvqllivvllpqpivalpphhhqavllqvplqvnhqvaplqvvlhpllqvalhplpqv
vlhhhqlqvqlhhqlqaqkaqkahqplhk*nfd


Frame C:
---htvcq*cipttl*sysmsn*fll*nd*r*snly*skttgttttllnlcraiism*sr
wndlysstkqlyqy*ipmlpissnlyssinyccfnhcnncincrnynlcnycrynnwwny
nwwfnf***ccflsr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*rsilclk*
csiiisfkfsciiscklrklrklishfinktli
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC720 (SLC720Q) /CSM/SL/SLC7-A/SLC720Q.Seq.d/                       1255   0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                       1241   0.0
SLG750 (SLG750Q) /CSM/SL/SLG7-C/SLG750Q.Seq.d/                       1241   0.0
SLE334 (SLE334Q) /CSM/SL/SLE3-B/SLE334Q.Seq.d/                       1241   0.0
SLE302 (SLE302Q) /CSM/SL/SLE3-A/SLE302Q.Seq.d/                       1241   0.0
SLE241 (SLE241Q) /CSM/SL/SLE2-B/SLE241Q.Seq.d/                       1241   0.0
SLC119 (SLC119Q) /CSM/SL/SLC1-A/SLC119Q.Seq.d/                       1241   0.0
SLB706 (SLB706Q) /CSM/SL/SLB7-A/SLB706Q.Seq.d/                       1241   0.0
SLB313 (SLB313Q) /CSM/SL/SLB3-A/SLB313Q.Seq.d/                       1241   0.0
SLB244 (SLB244Q) /CSM/SL/SLB2-B/SLB244Q.Seq.d/                       1241   0.0
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034342) Dictyostelium discoideum slug cDNA, clone SLC720.     1253   0.0    1
(D13973) Dictyostelium discoideum gene for Dp87 protein, com...  1231   0.0    1
(AU052267) Dictyostelium discoideum slug cDNA, clone SLA473.     1231   0.0    1
(AU052241) Dictyostelium discoideum slug cDNA, clone SLA408.     1231   0.0    1
(AU052233) Dictyostelium discoideum slug cDNA, clone SLA287.     1231   0.0    1
(AU052205) Dictyostelium discoideum slug cDNA, clone SLA236.     1231   0.0    1
(AU039917) Dictyostelium discoideum slug cDNA, clone SLG750.     1231   0.0    1
(AU034790) Dictyostelium discoideum slug cDNA, clone SLE334.     1231   0.0    1
(AU034767) Dictyostelium discoideum slug cDNA, clone SLE302.     1231   0.0    1
(AU034724) Dictyostelium discoideum slug cDNA, clone SLE241.     1231   0.0    1
dna update 2009. 3. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       159   6e-38
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   159   6e-38
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    49   1e-04
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    44   0.004
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    44   0.004
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    42   0.019
T27318(T27318)hypothetical protein Y69H2.3a - Caenorhabditis ele...    37   0.36
Z98877_12(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, com...    37   0.36
T27319(T27319)hypothetical protein Y69H2.3b - Caenorhabditis ele...    37   0.36
Z98877_10(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, com...    37   0.36
protein update 2009. 6. 2
PSORT 

 psg: 0.78  gvh: 0.43  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.13
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SLC720 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC720Z
3' end seq. 
>SLC720Z.Seq
----------GTCCACACTGTCTGCCAATAATGTATTCCCACAACTTTGTAAAGTTACTC
AATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTATTAAAGCAA
GACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGCATGTAATC
ACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTT
GCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAA
CTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAA
CTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTG
CCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCATCAAGTA
GCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAA
GTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAA
GCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTGATC
Length of 3' end seq. 633
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -