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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC716
Library SL
(Link to library)
Clone ID SLC716
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1
Original site URL
Representative seq. ID SLC716Z
(Link to Original site)
Representative DNA sequence 
>SLC716 (SLC716Q) /CSM/SL/SLC7-A/SLC716Q.Seq.d/
XXXXXXXXXXAACCCAAACCTCAATCTGTCAATCATCAACCAAGACTGTCAACGGTAAGA
CCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGA
TCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCA
ATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCCGTTGTTAAAG
GTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTG
CCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGT
CAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAA
CTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATT
CTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAATTTTA
AAACAATAAAAATTTACATATTAAAATTTAAAAA
sequence update 1998. 5.13
Translated Amino Acid sequence 
---TQTSICQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEAN
QAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWS
IVNSPCNCECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlfnfk
tikiyilkfk
Translated Amino Acid sequence (All Frames) 
Frame A:
---TQTSICQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEAN
QAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWS
IVNSPCNCECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlfnfk
tikiyilkfk


Frame B:
---pkpqsvnhqprlstvrpplnhhqahhhpslnnsfq*sfvqvllmllvtsmslpqkpi
klklplvlysnssqppllkvmspqlavspqalllllnklpvlllllpkkllwllplkfgq
l*ihhvtvnvd*rdykliqlllsndnklk*ynsflfffiltnvfvn*linflntpfsilk
q*kfty*nlk


Frame C:
---pnlnlsiinqdcqr*dhhsiiikliiihl*tirsndrlfryc*ccw*pqcrclrsqs
s*nclwyciqihlsprc*r*clls*lshlkhccccstscrccccccpkscygccl*slvn
ckftm*l*mwieeiin*fnssspmtin*nntthsyfslf*pmylsinlltf*thpfqf*n
nknlhiki*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC716 (SLC716Q) /CSM/SL/SLC7-A/SLC716Q.Seq.d/                        525   e-148
SLH545 (SLH545Q) /CSM/SL/SLH5-B/SLH545Q.Seq.d/                        509   e-143
SLE412 (SLE412Q) /CSM/SL/SLE4-A/SLE412Q.Seq.d/                        509   e-143
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/                        509   e-143
SLE320 (SLE320Q) /CSM/SL/SLE3-A/SLE320Q.Seq.d/                        509   e-143
SLE216 (SLE216Q) /CSM/SL/SLE2-A/SLE216Q.Seq.d/                        509   e-143
SLB147 (SLB147Q) /CSM/SL/SLB1-B/SLB147Q.Seq.d/                        509   e-143
SLA427 (SLA427Q) /CSM/SL/SLA4-B/SLA427Q.Seq.d/                        509   e-143
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/                        509   e-143
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/                        509   e-143
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034339) Dictyostelium discoideum slug cDNA, clone SLC716.      353   0.0    3
(BJ407485) Dictyostelium discoideum cDNA clone:dds38o18, 3' ...   345   0.0    3
(AU034706) Dictyostelium discoideum slug cDNA, clone SLE216.      345   0.0    3
(BJ409259) Dictyostelium discoideum cDNA clone:dds40f12, 3' ...   345   0.0    3
(AU034778) Dictyostelium discoideum slug cDNA, clone SLE320.      345   0.0    3
(BJ409547) Dictyostelium discoideum cDNA clone:dds42a16, 3' ...   345   0.0    3
(BJ386629) Dictyostelium discoideum cDNA clone:ddc58j24, 3' ...   345   0.0    3
(AU034962) Dictyostelium discoideum slug cDNA, clone SLE412.      345   0.0    3
(BJ409753) Dictyostelium discoideum cDNA clone:dds42k03, 3' ...   345   0.0    3
(AU039318) Dictyostelium discoideum slug cDNA, clone SLH545.      345   0.0    3
dna update 2009. 3. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p...   166   3e-40
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR...    34   3.1
AY524011_1(AY524011|pid:none) Paulownia tomentosa deficiens (DEF...    33   4.0
protein update 2009. 1.22
PSORT 

 psg: 0.70  gvh: 0.40  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: nuclear

>> prediction for SLC716 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC716Z
3' end seq. 
>SLC716Z.Seq
----------AACCCAAACCTCAATCTGTCAATCATCAACCAAGACTGTCAACGGTAAGA
CCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGA
TCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCA
ATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCCGTTGTTAAAG
GTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTG
CCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGT
CAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAA
CTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATT
CTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTCAATTTTA
AAACAATAAAAATTTACATATTAAAATTTAAAAA
Length of 3' end seq. 564
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -