SLC706
Library SL
(Link to library)
Clone ID SLC706
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11177-1
Original site URL
Representative seq. ID SLC706E
(Link to Original site)
Representative DNA sequence
>SLC706 (SLC706Q) /CSM/SL/SLC7-A/SLC706Q.Seq.d/
ATCGATTGAACAAGATGCTGCCAAATGTTATCTTCAAATTACCTCTGTTGTACCCTACTT
TACTGAGGAGGAATTGGTTGGTCGTAGAACTCCATTCGATAGAATCGTTCATTTGAATCG
ATTCATTTTCGAAACTCCATTCATTGAAAGTGGTGCAGGTCGTGCAAATTCAATCGCTGA
ACAATATAAACGTAAAACCATTCTAAAGACATCAAACTATTTCCCATATACAAAGAAACG
TATCTCTGTGATTTCAAAACAAGAGGTTATCTTGTCACCCATTGAAAATTCAATTGAAAC
CATTGATCAACGAACTGAAACCATTTCAAATGAAGTTCGTTCAAAAGTACCAAATCCAAA
AACACTTCAACAAGTACTTCAAGGTACTCTAAGATTACAAGTTAACATTGGTCCACAGGA
AATTTGTAGAGTATTTTTGGCAACTGACCCAACAAGTGGTGCCTATAATTATCCATTGGA
ACAAATTAAAAAGTTAAAGAAAAGTTTATCATTATTTTTGGGTAGTTGCTCTGAAGCATT
ATTCATTAATAAAGGTTTAGTTGAAAATCAATCCTCTCAAGAATTCCAAGAAGAAATGGA
ACAAGGTTATATTCAATTAACTGATTTAATGGAGTCTTTAGGTGTTTTACCACCAGAAGG
CTCCTATTATCCAACTTTAAATTCAAATTCTAATGGCACTAGTAGTAATAATAATCTTAG
TAATAGTAGTATCTATGGAAGTAGTAATAATTTTGGTGGTAGTGGTTCTCCAGTTATTCA
ATTAAATTCCTCAATGATTAATAATACTGGTTCAAGTAGTGGTAACAATACTCCAACAAA
ATCTCATAATAGAAATAGTTCAAATCCAAATAGAAATTCAACTGGTAGTGGTAGTACAAT
TTCATTAGAGAATGATGATGATTCAAATTTTAATAATTTATTATCAACTTCTCATGTTAG
TAGAAAATCTTTTACTCAACGTCTTTCTAGTGGTTTTAAATCTGACTAAA
sequence update 1999. 6.18
Translated Amino Acid sequence
SIEQDAAKCYLQITSVVPYFTEEELVGRRTPFDRIVHLNRFIFETPFIESGAGRANSIAE
QYKRKTILKTSNYFPYTKKRISVISKQEVILSPIENSIETIDQRTETISNEVRSKVPNPK
TLQQVLQGTLRLQVNIGPQEICRVFLATDPTSGAYNYPLEQIKKLKKSLSLFLGSCSEAL
FINKGLVENQSSQEFQEEMEQGYIQLTDLMESLGVLPPEGSYYPTLNSNSNGTSSNNNLS
NSSIYGSSNNFGGSGSPVIQLNSSMINNTGSSSGNNTPTKSHNRNSSNPNRNSTGSGSTI
SLENDDDSNFNNLLSTSHVSRKSFTQRLSSGFKSD*


Translated Amino Acid sequence (All Frames)
Frame A:
id*trccqmlssnylcctlly*ggigws*nsir*nrsfesihfrnsih*kwcrsckfnr*
ti*t*nhskdiklfpiyketylcdfktrgylvth*kfn*nh*stn*nhfk*ssfkstksk
ntststsryskits*hwstgnl*sifgn*pnkwcl*lsigtn*kvkekfiiifg*ll*si
ih**rfs*ksilsriprrngtrlysin*fngvfrcfttrrlllsnfkfkf*wh*****s*
***ylwk***fww*wfssysikflnd**ywfk*w*qysnkis**k*fksk*kfnw*w*yn
fire***fkf**fiinfsc**kifystsf*wf*i*l


Frame B:
SIEQDAAKCYLQITSVVPYFTEEELVGRRTPFDRIVHLNRFIFETPFIESGAGRANSIAE
QYKRKTILKTSNYFPYTKKRISVISKQEVILSPIENSIETIDQRTETISNEVRSKVPNPK
TLQQVLQGTLRLQVNIGPQEICRVFLATDPTSGAYNYPLEQIKKLKKSLSLFLGSCSEAL
FINKGLVENQSSQEFQEEMEQGYIQLTDLMESLGVLPPEGSYYPTLNSNSNGTSSNNNLS
NSSIYGSSNNFGGSGSPVIQLNSSMINNTGSSSGNNTPTKSHNRNSSNPNRNSTGSGSTI
SLENDDDSNFNNLLSTSHVSRKSFTQRLSSGFKSD*


Frame C:
rlnkmlpnvifklpllyptllrrnwlvvelhsiesfi*idsfsklhslkvvqvvqiqsln
ninvkpf*rhqtishiqrnvsl*fqnkrlschplkiqlkplinelkpfqmkfvqkyqiqk
hfnkyfkvl*dykltlvhrkfveyfwqltqqvvpiiihwnklks*rkvyhyfwvvalkhy
slikv*lkinplknskkkwnkvifn*li*wsl*vfyhqkapiiql*iqilmalvviiilv
ivvsmevviilvvvvlqlfn*ipq*liilvqvvvtilqqnliieivqiqieiqlvvvvqf
h*rmmmiqiliiyyqllmlvenlllnvflvvlnltk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLC706 (SLC706Q) /CSM/SL/SLC7-A/SLC706Q.Seq.d/ 2002 0.0
VHO896 (VHO896Q) /CSM/VH/VHO8-D/VHO896Q.Seq.d/ 1413 0.0
AHB202 (AHB202Q) /CSM/AH/AHB2-A/AHB202Q.Seq.d/ 1403 0.0
VHN751 (VHN751Q) /CSM/VH/VHN7-C/VHN751Q.Seq.d/ 1378 0.0
VHE128 (VHE128Q) /CSM/VH/VHE1-B/VHE128Q.Seq.d/ 1334 0.0
SHC157 (SHC157Q) /CSM/SH/SHC1-C/SHC157Q.Seq.d/ 1231 0.0
CHH606 (CHH606Q) /CSM/CH/CHH6-A/CHH606Q.Seq.d/ 1086 0.0
VSB545 (VSB545Q) /CSM/VS/VSB5-B/VSB545Q.Seq.d/ 769 0.0
VSH842 (VSH842Q) /CSM/VS/VSH8-B/VSH842Q.Seq.d/ 428 e-119
VHF807 (VHF807Q) /CSM/VH/VHF8-A/VHF807Q.Seq.d/ 42 0.016

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 2002 0.0 1
(AU061039) Dictyostelium discoideum slug cDNA, clone SLC706. 1386 0.0 1
(BJ445139) Dictyostelium discoideum cDNA clone:ddv58f13, 3' ... 1378 0.0 1
(BJ445895) Dictyostelium discoideum cDNA clone:ddv60p24, 3' ... 1360 0.0 3
(BJ348367) Dictyostelium discoideum cDNA clone:dda33c02, 3' ... 1320 0.0 2
(BJ404425) Dictyostelium discoideum cDNA clone:dds28a15, 3' ... 1231 0.0 1
(AU034334) Dictyostelium discoideum slug cDNA, clone SLC706. 1138 0.0 1
(BJ380134) Dictyostelium discoideum cDNA clone:ddc37k02, 3' ... 1086 0.0 1
(BJ439062) Dictyostelium discoideum cDNA clone:ddv39g07, 3' ... 955 0.0 4
(AU262087) Dictyostelium discoideum vegetative cDNA clone:VS... 769 0.0 1
dna update 2009. 3. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_19(AC116305|pid:none) Dictyostelium discoideum chromoso... 409 e-113
AE014134_17(AE014134|pid:none) Drosophila melanogaster chromosom... 125 2e-27
AK024436_1(AK024436|pid:none) Homo sapiens mRNA for FLJ00026 pro... 123 9e-27
AK090429_1(AK090429|pid:none) Homo sapiens mRNA for FLJ00346 pro... 123 9e-27
AX174569_1(AX174569|pid:none) Sequence 1 from Patent WO0142296. 123 9e-27
BC019102_1(BC019102|pid:none) Homo sapiens dedicator of cytokine... 123 9e-27
AB191037_1(AB191037|pid:none) Homo sapiens DOCK8 mRNA for dedica... 123 9e-27
BC112894_1(BC112894|pid:none) Homo sapiens dedicator of cytokine... 123 9e-27
DQ118679_1(DQ118679|pid:none) Homo sapiens dedicator of cytokine... 122 3e-26
AK091479_1(AK091479|pid:none) Homo sapiens cDNA FLJ34160 fis, cl... 122 3e-26
protein update 2009. 7. 4
PSORT

psg: 0.75 gvh: 0.37 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.11 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
36.0 %: cytoplasmic
16.0 %: cytoskeletal

>> prediction for SLC706 is nuc

5' end seq. ID SLC706F
5' end seq.
>SLC706F.Seq
ATCGATTGAACAAGATGCTGCCAAATGTTATCTTCAAATTACCTCTGTTGTACCCTACTT
TACTGAGGAGGAATTGGTTGGTCGTAGAACTCCATTCGATAGAATCGTTCATTTGAATCG
ATTCATTTTCGAAACTCCATTCATTGAAAGTGGTGCAGGTCGTGCAAATTCAATCGCTGA
ACAATATAAACGTAAAACCATTCTAAAGACATCAAACTATTTCCCATATACAAAGAAACG
TATCTCTGTGATTTCAAAACAAGAGGTTATCTTGTCACCCATTGAAAATTCAATTGAAAC
CATTGATCAACGAACTGAAACCATTTCAAATGAAGTTCGTTCAAAAGTACCAAATCCAAA
AACACTTCAACAAGTACTTCAAGGTACTCTAAGATTACAAGTTAACATTGGTCCACAGGA
AATTTGTAGAGTATTTTTGGCAACTGACCCAACAAGTGGTGCCTATAATTATCCATTGGA
ACAAATTAAAAAGTTAAAGAAAAGTTTATCATTATTTTTGGGTAGTTGCTCTGAAGCATT
ATTCATTAATAAAGGTTTAGTTGAAAATCAATCCTCTCAAGAATTCCAAGAAGAAATGGA
ACAAGGTTATATTCAATTAACTGATTTAATGGAGTCTTTAGGTGTTTTACCACCAGAAGG
CTCCTATTATCCAACTTTAAATTCAAATTCTAATGGCAC----------
Length of 5' end seq. 699
3' end seq. ID SLC706Z
3' end seq.
>SLC706Z.Seq
----------TTGGCAACTGACCCAACAAGTGGTGCCTATAATTATCCATTGGAACAAAT
TAAAAAGTTAAAGAAAAGTTTATCATTATTTTTGGGTAGTTGCTCTGAAGCATTATTCAT
TAATAAAGGTTTAGTTGAAAATCAATCCTCTCAAGAATTCCAAGAAGAAATGGAACAAGG
TTATATTCAATTAACTGATTTAATGGAGTCTTTAGGTGTTTTACCACCAGAAGGCTCCTA
TTATCCAACTTTAAATTCAAATTCTAATGGCACTAGTAGTAATAATAATCTTAGTAATAG
TAGTATCTATGGAAGTAGTAATAATTTTGGTGGTAGTGGTTCTCCAGTTATTCAATTAAA
TTCCTCAATGATTAATAATACTGGTTCAAGTAGTGGTAACAATACTCCAACAAAATCTCA
TAATAGAAATAGTTCAAATCCAAATAGAAATTCAACTGGTAGTGGTAGTACAATTTCATT
AGAGAATGATGATGATTCAAATTTTAATAATTTATTATCAACTTCTCATGTTAGTAGAAA
ATCTTTTACTCAACGTCTTTCTAGTGGTTTTAAATCTGACTAAA
Length of 3' end seq. 574
Connected seq. ID SLC706P
Connected seq.
>SLC706P.Seq
ATCGATTGAACAAGATGCTGCCAAATGTTATCTTCAAATTACCTCTGTTGTACCCTACTT
TACTGAGGAGGAATTGGTTGGTCGTAGAACTCCATTCGATAGAATCGTTCATTTGAATCG
ATTCATTTTCGAAACTCCATTCATTGAAAGTGGTGCAGGTCGTGCAAATTCAATCGCTGA
ACAATATAAACGTAAAACCATTCTAAAGACATCAAACTATTTCCCATATACAAAGAAACG
TATCTCTGTGATTTCAAAACAAGAGGTTATCTTGTCACCCATTGAAAATTCAATTGAAAC
CATTGATCAACGAACTGAAACCATTTCAAATGAAGTTCGTTCAAAAGTACCAAATCCAAA
AACACTTCAACAAGTACTTCAAGGTACTCTAAGATTACAAGTTAACATTGGTCCACAGGA
AATTTGTAGAGTATTTTTGGCAACTGACCCAACAAGTGGTGCCTATAATTATCCATTGGA
ACAAATTAAAAAGTTAAAGAAAAGTTTATCATTATTTTTGGGTAGTTGCTCTGAAGCATT
ATTCATTAATAAAGGTTTAGTTGAAAATCAATCCTCTCAAGAATTCCAAGAAGAAATGGA
ACAAGGTTATATTCAATTAACTGATTTAATGGAGTCTTTAGGTGTTTTACCACCAGAAGG
CTCCTATTATCCAACTTTAAATTCAAATTCTAATGGCAC----------TTGGCAACTGA
CCCAACAAGTGGTGCCTATAATTATCCATTGGAACAAATTAAAAAGTTAAAGAAAAGTTT
ATCATTATTTTTGGGTAGTTGCTCTGAAGCATTATTCATTAATAAAGGTTTAGTTGAAAA
TCAATCCTCTCAAGAATTCCAAGAAGAAATGGAACAAGGTTATATTCAATTAACTGATTT
AATGGAGTCTTTAGGTGTTTTACCACCAGAAGGCTCCTATTATCCAACTTTAAATTCAAA
TTCTAATGGCACTAGTAGTAATAATAATCTTAGTAATAGTAGTATCTATGGAAGTAGTAA
TAATTTTGGTGGTAGTGGTTCTCCAGTTATTCAATTAAATTCCTCAATGATTAATAATAC
TGGTTCAAGTAGTGGTAACAATACTCCAACAAAATCTCATAATAGAAATAGTTCAAATCC
AAATAGAAATTCAACTGGTAGTGGTAGTACAATTTCATTAGAGAATGATGATGATTCAAA
TTTTAATAATTTATTATCAACTTCTCATGTTAGTAGAAAATCTTTTACTCAACGTCTTTC
TAGTGGTTTTAAATCTGACTAAA
Length of connected seq. 1273
Full length Seq ID SLC706E
Full length Seq.
>SLC706E.Seq
ATCGATTGAACAAGATGCTGCCAAATGTTATCTTCAAATTACCTCTGTTGTACCCTACTT
TACTGAGGAGGAATTGGTTGGTCGTAGAACTCCATTCGATAGAATCGTTCATTTGAATCG
ATTCATTTTCGAAACTCCATTCATTGAAAGTGGTGCAGGTCGTGCAAATTCAATCGCTGA
ACAATATAAACGTAAAACCATTCTAAAGACATCAAACTATTTCCCATATACAAAGAAACG
TATCTCTGTGATTTCAAAACAAGAGGTTATCTTGTCACCCATTGAAAATTCAATTGAAAC
CATTGATCAACGAACTGAAACCATTTCAAATGAAGTTCGTTCAAAAGTACCAAATCCAAA
AACACTTCAACAAGTACTTCAAGGTACTCTAAGATTACAAGTTAACATTGGTCCACAGGA
AATTTGTAGAGTATTTTTGGCAACTGACCCAACAAGTGGTGCCTATAATTATCCATTGGA
ACAAATTAAAAAGTTAAAGAAAAGTTTATCATTATTTTTGGGTAGTTGCTCTGAAGCATT
ATTCATTAATAAAGGTTTAGTTGAAAATCAATCCTCTCAAGAATTCCAAGAAGAAATGGA
ACAAGGTTATATTCAATTAACTGATTTAATGGAGTCTTTAGGTGTTTTACCACCAGAAGG
CTCCTATTATCCAACTTTAAATTCAAATTCTAATGGCACTAGTAGTAATAATAATCTTAG
TAATAGTAGTATCTATGGAAGTAGTAATAATTTTGGTGGTAGTGGTTCTCCAGTTATTCA
ATTAAATTCCTCAATGATTAATAATACTGGTTCAAGTAGTGGTAACAATACTCCAACAAA
ATCTCATAATAGAAATAGTTCAAATCCAAATAGAAATTCAACTGGTAGTGGTAGTACAAT
TTCATTAGAGAATGATGATGATTCAAATTTTAATAATTTATTATCAACTTCTCATGTTAG
TAGAAAATCTTTTACTCAACGTCTTTCTAGTGGTTTTAAATCTGACTAAA
Length of full length seq. 1010