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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC642
Library SL
(Link to library)
Clone ID SLC642
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15436-1
Original site URL
Representative seq. ID SLC642E
(Link to Original site)
Representative DNA sequence 
>SLC642 (SLC642Q) /CSM/SL/SLC6-B/SLC642Q.Seq.d/
GTCCAGAAGCTCATCAAGATTGGGTTTCATGTATCAGATTCTCACCAAACACCCCAACCA
TCGTTTCAGGTTCATGGGATAACAAAGTTAAGATCTGGGATATCAAGAGCTTCAAATGCA
ACCACACCTTAACTGACCATACCGGTTACGTCAACACTGTCACCATCTCTCCAGACGGTT
CATTATGTGCCTCTGGTGGTAAAGATACCTTTGCTTGTCTCTGGGAATTATCATCTGGTA
AACCATTATACAAATTAGAAGCTCGTAACACCATCAATGCTCTTGCTTTCTCACCAAACA
AATATTGGTTATCTGCTGCCACTGATGACAAAATCATCATTTGGGATCTCCTCACCAAAC
AAGTTCTCGCTGAAATCGTCCCAGAAGTCAAAGAACAAGCTTTCGACTCAAAGAAAAAGA
AAGAATCAAAACCAAAAGCACCAGCTTGTCTCTCCCTCGCTTGGTCTGCTGATGGTTCAG
TCTTATATGCTGGTTACAATGATGGTTTAATCCGTGTTTACAAATCATCATCCCAATAAA
TTTTTTAATTAAAATTTCAAAA
sequence update 1998. 5.10
Translated Amino Acid sequence 
PEAHQDWVSCIRFSPNTPTIVSGSWDNKVKIWDIKSFKCNHTLTDHTGYVNTVTISPDGS
LCASGGKDTFACLWELSSGKPLYKLEARNTINALAFSPNKYWLSAATDDKIIIWDLLTKQ
VLAEIVPEVKEQAFDSKKKKESKPKAPACLSLAWSADGSVLYAGYNDGLIRVYKSSSQ*i
f*lkfq
Translated Amino Acid sequence (All Frames) 
Frame A:
vqklikigfhvsdshqtpqpsfqvhgitklrsgisrasnattp*ltipvtstlspslqtv
hyvplvvkipllvsgnyhlvnhytn*klvtpsmlllshqtnigyllplmtkssfgisspn
kfslkssqksknklstqrkrknqnqkhqlvspslgllmvqsymlvtmmv*svftnhhpnk
ffn*nfk


Frame B:
srsssrlgfmyqiltkhpnhrfrfmg*qs*dlgyqelqmqphln*pyrlrqhchhlsrrf
imclww*rylclslgiiiw*tiiqirss*hhqcscfltkqilvicch**qnhhlgsphqt
ssr*nrprsqrtsfrlkekeriktkstslslprlvc*wfslicwlq*wfnpclqiiipin
flikisk


Frame C:
PEAHQDWVSCIRFSPNTPTIVSGSWDNKVKIWDIKSFKCNHTLTDHTGYVNTVTISPDGS
LCASGGKDTFACLWELSSGKPLYKLEARNTINALAFSPNKYWLSAATDDKIIIWDLLTKQ
VLAEIVPEVKEQAFDSKKKKESKPKAPACLSLAWSADGSVLYAGYNDGLIRVYKSSSQ*i
f*lkfq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH295 (SLH295Q) /CSM/SL/SLH2-D/SLH295Q.Seq.d/                       1114   0.0
SLE560 (SLE560Q) /CSM/SL/SLE5-C/SLE560Q.Seq.d/                       1114   0.0
SLE327 (SLE327Q) /CSM/SL/SLE3-B/SLE327Q.Seq.d/                       1114   0.0
SLD484 (SLD484Q) /CSM/SL/SLD4-D/SLD484Q.Seq.d/                       1114   0.0
SLC745 (SLC745Q) /CSM/SL/SLC7-B/SLC745Q.Seq.d/                       1114   0.0
SLC642 (SLC642Q) /CSM/SL/SLC6-B/SLC642Q.Seq.d/                       1114   0.0
SLC527 (SLC527Q) /CSM/SL/SLC5-B/SLC527Q.Seq.d/                       1114   0.0
SLA452 (SLA452Q) /CSM/SL/SLA4-C/SLA452Q.Seq.d/                       1114   0.0
FCL-AD19 (FCL-AD19Q) /CSM/FCL/FCL-AD/FCL-AD19Q.Seq.d/                1114   0.0
SLC187 (SLC187Q) /CSM/SL/SLC1-D/SLC187Q.Seq.d/                       1108   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...  1114   0.0    1
(AU052535) Dictyostelium discoideum slug cDNA, clone SLD484.     1114   0.0    1
(AU052258) Dictyostelium discoideum slug cDNA, clone SLA452.     1114   0.0    1
(AU039259) Dictyostelium discoideum slug cDNA, clone SLH295.     1114   0.0    1
(AU034831) Dictyostelium discoideum slug cDNA, clone SLE560.     1114   0.0    1
(AU034785) Dictyostelium discoideum slug cDNA, clone SLE327.     1114   0.0    1
(AU034620) Dictyostelium discoideum slug cDNA, clone SLC642.     1114   0.0    1
(AU034361) Dictyostelium discoideum slug cDNA, clone SLC745.     1114   0.0    1
(AU034289) Dictyostelium discoideum slug cDNA, clone SLC527.     1114   0.0    1
(AU034471) Dictyostelium discoideum slug cDNA, clone SLC187.     1108   0.0    1
dna update 2009. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27537_1(U27537|pid:none) Dictyostelium discoideum G beta like p...   310   1e-83
U77381_1(U77381|pid:none) Arabidopsis thaliana WD-40 repeat prot...   200   2e-50
EU906910_1(EU906910|pid:none) Phaseolus vulgaris Rack (RACK) mRN...   199   4e-50
AC129717_13(AC129717|pid:none) Oryza sativa (japonica cultivar-g...   198   9e-50
(P49027) RecName: Full=Guanine nucleotide-binding protein subuni...   197   2e-49
(P49026) RecName: Full=Guanine nucleotide-binding protein subuni...   197   2e-49
AC073555_19(AC073555|pid:none) Arabidopsis thaliana chromosome 1...   196   3e-49
EU952736_1(EU952736|pid:none) Zea mays clone 1287276 guanine nuc...   196   3e-49
BT055706_1(BT055706|pid:none) Zea mays full-length cDNA clone ZM...   196   3e-49
AB022686_1(AB022686|pid:none) Solanum lycopersicum mRNA for LeAr...   196   4e-49
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC642 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC642E
Full length Seq. 
>SLC642E.Seq
GTCCAGAAGCTCATCAAGATTGGGTTTCATGTATCAGATTCTCACCAAACACCCCAACCA
TCGTTTCAGGTTCATGGGATAACAAAGTTAAGATCTGGGATATCAAGAGCTTCAAATGCA
ACCACACCTTAACTGACCATACCGGTTACGTCAACACTGTCACCATCTCTCCAGACGGTT
CATTATGTGCCTCTGGTGGTAAAGATACCTTTGCTTGTCTCTGGGAATTATCATCTGGTA
AACCATTATACAAATTAGAAGCTCGTAACACCATCAATGCTCTTGCTTTCTCACCAAACA
AATATTGGTTATCTGCTGCCACTGATGACAAAATCATCATTTGGGATCTCCTCACCAAAC
AAGTTCTCGCTGAAATCGTCCCAGAAGTCAAAGAACAAGCTTTCGACTCAAAGAAAAAGA
AAGAATCAAAACCAAAAGCACCAGCTTGTCTCTCCCTCGCTTGGTCTGCTGATGGTTCAG
TCTTATATGCTGGTTACAATGATGGTTTAATCCGTGTTTACAAATCATCATCCCAATAAA
TTTTTTAATTAAAATTTCAAAA
Length of full length seq. 562