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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC636
Library SL
(Link to library)
Clone ID SLC636
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15792-1
Original site URL
Representative seq. ID SLC636F
(Link to Original site)
Representative DNA sequence 
>SLC636 (SLC636Q) /CSM/SL/SLC6-B/SLC636Q.Seq.d/
CATTTATGGCTGGTGAAGTTGAAACTGGTTTCATCCCAATTCACAGAGAATCCTTAATGG
CCCCACAAGCTCCAATGTCTGATGATTCATTAGCATTGGCTGCCACAAGTTTACTCTTAA
AAGAGATCACTCAACAAAAATCAAAAGAAGATCCAAACTCACCTTGGTCAAGTTTAGGTG
GTTTCCGTATTAATCATAATTTAAAAAAACAAGTTAAATTCAATCAAAAAGATAATAAAG
TTGTTGTTAATGTTGAATTCATTGGTGGTGGTGGTGCTGCTGCTAATGGTAAACATAACT
TTAAAGTAACTTTAGATAATGGTAATGTCGTTGAAGTTTTAGATGCAAAATTAAATCAAA
ATAATGAAACTATTAGTGCTCATGTAAATGGTAGATTCTATAATAACATTAAATCCGTCA
TTGTAAAGGATACTTTAACAATCTTTAATGAAGGTCAACAATACCGATTGGATATTCCTC
AAGATGTTAAACCAAAAGGTGCTGATGGTGTATTGGGTTCTTTAGTTTCACCAATGCCTG
GGAAAAATCACTAAAGTTATGGTAAATGTTGGTGACATGGTTAAAAAGGGTCAACCAATC
TTACTCATGGAAGCAATGAAAATGGAACATACTATTCGTTCTCCAATCGXXXXXXXXXX
sequence update 1999. 1.13
Translated Amino Acid sequence 
FMAGEVETGFIPIHRESLMAPQAPMSDDSLALAATSLLLKEITQQKSKEDPNSPWSSLGG
FRINHNLKKQVKFNQKDNKVVVNVEFIGGGGAAANGKHNFKVTLDNGNVVEVLDAKLNQN
NETISAHVNGRFYNNIKSVIVKDTLTIFNEGQQYRLDIPQDVKPKGADGVLGSLVSPMPG
KNH*sygkcw*hg*kgstnlthgsnengtyysfsn---
Translated Amino Acid sequence (All Frames) 
Frame A:
hlwlvklklvssqftenp*wphklqclmih*hwlpqvys*krslnknqkkiqthlgqv*v
vsvliii*knklnsikkiiklllmlnslvvvvlllmvnitlk*l*imvmslkf*mqn*ik
imkllvlm*mvdsiitlnpsl*ril*qslmkvnntdwiflkmlnqkvlmvywvl*fhqcl
gkitkvmvnvgdmvkkgqpillmeamkmehtirspi---


Frame B:
iygw*s*nwfhpnsqrilngptssnv**fisigchkftlkrdhstkikrrskltlvkfrw
fpy*s*fkkts*iqskr**scc*c*ihwwwwccc*w*t*l*snfr*w*cr*sfrckiksk
**ny*csckw*il**h*irhckgyfnnl**rstipigyssrc*tkrc*wcigffsftnaw
ekslklw*mlvtwlkrvnqsyswkq*kwnilfvlq---


Frame C:
FMAGEVETGFIPIHRESLMAPQAPMSDDSLALAATSLLLKEITQQKSKEDPNSPWSSLGG
FRINHNLKKQVKFNQKDNKVVVNVEFIGGGGAAANGKHNFKVTLDNGNVVEVLDAKLNQN
NETISAHVNGRFYNNIKSVIVKDTLTIFNEGQQYRLDIPQDVKPKGADGVLGSLVSPMPG
KNH*sygkcw*hg*kgstnlthgsnengtyysfsn---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC636 (SLC636Q) /CSM/SL/SLC6-B/SLC636Q.Seq.d/                       1245   0.0
VHP809 (VHP809Q) /CSM/VH/VHP8-A/VHP809Q.Seq.d/                       1221   0.0
VHK848 (VHK848Q) /CSM/VH/VHK8-B/VHK848Q.Seq.d/                       1221   0.0
VHN237 (VHN237Q) /CSM/VH/VHN2-B/VHN237Q.Seq.d/                       1215   0.0
VHJ432 (VHJ432Q) /CSM/VH/VHJ4-B/VHJ432Q.Seq.d/                       1213   0.0
VHE237 (VHE237Q) /CSM/VH/VHE2-B/VHE237Q.Seq.d/                       1164   0.0
VFA789 (VFA789Q) /CSM/VF/VFA7-D/VFA789Q.Seq.d/                       1136   0.0
SFI331 (SFI331Q) /CSM/SF/SFI3-B/SFI331Q.Seq.d/                       1108   0.0
VHD217 (VHD217Q) /CSM/VH/VHD2-A/VHD217Q.Seq.d/                       1100   0.0
VHP105 (VHP105Q) /CSM/VH/VHP1-A/VHP105Q.Seq.d/                       1098   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061018) Dictyostelium discoideum slug cDNA, clone SLC636.      870   0.0    2
(BJ446207) Dictyostelium discoideum cDNA clone:ddv62b04, 3' ...   652   0.0    3
(BJ445930) Dictyostelium discoideum cDNA clone:ddv61i01, 3' ...   652   0.0    3
(BJ444755) Dictyostelium discoideum cDNA clone:ddv57i10, 3' ...   652   0.0    3
(BJ443284) Dictyostelium discoideum cDNA clone:ddv52p12, 3' ...   652   0.0    3
(BJ442303) Dictyostelium discoideum cDNA clone:ddv49p08, 3' ...   652   0.0    3
(BJ439074) Dictyostelium discoideum cDNA clone:ddv39i10, 3' ...   652   0.0    3
(BJ438454) Dictyostelium discoideum cDNA clone:ddv37a06, 3' ...   652   0.0    3
(BJ402590) Dictyostelium discoideum cDNA clone:dds17n07, 3' ...   652   0.0    3
(BJ429222) Dictyostelium discoideum cDNA clone:ddv2b23, 3' e...   644   0.0    3
dna update 2009. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KE6) RecName: Full=Methylcrotonoyl-CoA carboxylase subunit a...   310   6e-99
BX005105_1(BX005105|pid:none) Zebrafish DNA sequence from clone ...    50   2e-13
BC125958_1(BC125958|pid:none) Danio rerio zgc:154106, mRNA (cDNA...    50   3e-13
CP000781_1841(CP000781|pid:none) Xanthobacter autotrophicus Py2,...    60   6e-13
CP000148_3255(CP000148|pid:none) Geobacter metallireducens GS-15...    49   6e-13
A98299(A98299) 3-methylcrotonyl-CoA carboxylase alpha chain (AF3...    56   2e-12
AE007870_470(AE007870|pid:none) Agrobacterium tumefaciens str. C...    56   2e-12
AL646052_265(AL646052|pid:none) Ralstonia solanacearum GMI1000 c...    50   5e-12
(Q5I0C3) RecName: Full=Methylcrotonoyl-CoA carboxylase subunit a...    47   2e-11
CU459003_2063(CU459003|pid:none) Magnetospirillum gryphiswaldens...    47   4e-11
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.54  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for SLC636 is cyt
5' end seq. ID SLC636F
5' end seq. 
>SLC636F.Seq
CATTTATGGCTGGTGAAGTTGAAACTGGTTTCATCCCAATTCACAGAGAATCCTTAATGG
CCCCACAAGCTCCAATGTCTGATGATTCATTAGCATTGGCTGCCACAAGTTTACTCTTAA
AAGAGATCACTCAACAAAAATCAAAAGAAGATCCAAACTCACCTTGGTCAAGTTTAGGTG
GTTTCCGTATTAATCATAATTTAAAAAAACAAGTTAAATTCAATCAAAAAGATAATAAAG
TTGTTGTTAATGTTGAATTCATTGGTGGTGGTGGTGCTGCTGCTAATGGTAAACATAACT
TTAAAGTAACTTTAGATAATGGTAATGTCGTTGAAGTTTTAGATGCAAAATTAAATCAAA
ATAATGAAACTATTAGTGCTCATGTAAATGGTAGATTCTATAATAACATTAAATCCGTCA
TTGTAAAGGATACTTTAACAATCTTTAATGAAGGTCAACAATACCGATTGGATATTCCTC
AAGATGTTAAACCAAAAGGTGCTGATGGTGTATTGGGTTCTTTAGTTTCACCAATGCCTG
GGAAAAATCACTAAAGTTATGGTAAATGTTGGTGACATGGTTAAAAAGGGTCAACCAATC
TTACTCATGGAAGCAATGAAAATGGAACATACTATTCGTTCTCCAATCG----------
Length of 5' end seq. 649
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -