SLC615
Library SL
(Link to library)
Clone ID SLC615
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID SLC615Z
(Link to Original site)
Representative DNA sequence
>SLC615 (SLC615Q) /CSM/SL/SLC6-A/SLC615Q.Seq.d/
XXXXXXXXXXTTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGGT
GTATGTATTCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCA
ACTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCA
ACTCCAACTACAACTCCAACTCCATCACCAACCACTGTCCCACCAAGACCAACCCCAACT
CCATTACCAGCTGATCCACCACCATATGATTTAGAAGAAGGTTGTTTAGTATGTCGTGAT
CTTGATTGTGAAAAAACAGGTAAGAGTTGTACATACCTTGAAAATGAAACAATTCGTTTA
TTTGAATGTAAAGGTGTAGGTTGTTGTAAATATACACCAACTTGTTATTAATCAATTTTT
TGATTAATTATTAAAAACCATCAAAAATATCTGAAAAAAAAA
sequence update 1998. 5. 9
Translated Amino Acid sequence
---NCTSTDPCIFSYCENGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPT
PTTTPTPSPTTVPPRPTPTPLPADPPPYDLEEGCLVCRDLDCEKTGKSCTYLENETIRLF
ECKGVGCCKYTPTCY*sif*liiknhqkylkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---*lykh*smhffil*kwcmysnihlysnsicnsncypncysncypncytnrysnrypn
snynsnsitnhcptktnpnsits*stti*frrrlfsms*s*l*knr*elyip*k*nnsfi
*m*rcrll*iytnlllinfliny*kpskisekk


Frame B:
---NCTSTDPCIFSYCENGVCIPTYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPT
PTTTPTPSPTTVPPRPTPTPLPADPPPYDLEEGCLVCRDLDCEKTGKSCTYLENETIRLF
ECKGVGCCKYTPTCY*sif*liiknhqkylkkk


Frame C:
---ivqalihaffhivkmvyvfqhtfvlqlhl*lqllpqlllqllpqllhqpllqplpql
qlqlqlhhqplshqdqpqlhyqlihhhmi*kkvv*yvvilivkkqvrvvhtlkmkqfvyl
nvkv*vvvnihqlvinqffd*llktikni*kk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH875 (SSH875Q) /CSM/SS/SSH8-D/SSH875Q.Seq.d/ 878 0.0
SLH793 (SLH793Q) /CSM/SL/SLH7-D/SLH793Q.Seq.d/ 878 0.0
SLD426 (SLD426Q) /CSM/SL/SLD4-B/SLD426Q.Seq.d/ 878 0.0
SLC615 (SLC615Q) /CSM/SL/SLC6-A/SLC615Q.Seq.d/ 878 0.0
SLA680 (SLA680Q) /CSM/SL/SLA6-D/SLA680Q.Seq.d/ 878 0.0
SLI746 (SLI746Q) /CSM/SL/SLI7-B/SLI746Q.Seq.d/ 870 0.0
SLF282 (SLF282Q) /CSM/SL/SLF2-D/SLF282Q.Seq.d/ 860 0.0
CFC681 (CFC681Q) /CSM/CF/CFC6-D/CFC681Q.Seq.d/ 833 0.0
CFD233 (CFD233Q) /CSM/CF/CFD2-B/CFD233Q.Seq.d/ 793 0.0
CHA362 (CHA362Q) /CSM/CH/CHA3-C/CHA362Q.Seq.d/ 791 0.0

own update 2002.12.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034607) Dictyostelium discoideum slug cDNA, clone SLC615. 375 0.0 2
(AU052499) Dictyostelium discoideum slug cDNA, clone SLD426. 375 0.0 2
(AU060244) Dictyostelium discoideum slug cDNA, clone SLA680. 375 0.0 2
(AU038566) Dictyostelium discoideum slug cDNA, clone SSH875. 375 0.0 2
(AU039441) Dictyostelium discoideum slug cDNA, clone SLH793. 375 0.0 2
(AU053484) Dictyostelium discoideum slug cDNA, clone SLI746. 375 0.0 2
(AU052892) Dictyostelium discoideum slug cDNA, clone SLF282. 375 0.0 2
(BJ374149) Dictyostelium discoideum cDNA clone:ddc6a22, 3' e... 325 e-177 3
(BJ377114) Dictyostelium discoideum cDNA clone:ddc22l15, 3' ... 325 e-164 3
(BJ374319) Dictyostelium discoideum cDNA clone:ddc7a10, 3' e... 295 e-163 3
dna update 2009. 3. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 146 2e-34
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 58 9e-08
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 49 5e-05
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 39 0.054
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 34 1.3
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 32 6.5
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 32 6.5
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 32 6.5
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 32 6.5
CP000682_800(CP000682|pid:none) Metallosphaera sedula DSM 5348, ... 32 8.5
protein update 2009. 1.22
PSORT

psg: 0.75 gvh: 0.34 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: plasma membrane
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SLC615 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC615Z
3' end seq.
>SLC615Z.Seq
----------TTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGGT
GTATGTATTCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCA
ACTGTTACTCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCA
ACTCCAACTACAACTCCAACTCCATCACCAACCACTGTCCCACCAAGACCAACCCCAACT
CCATTACCAGCTGATCCACCACCATATGATTTAGAAGAAGGTTGTTTAGTATGTCGTGAT
CTTGATTGTGAAAAAACAGGTAAGAGTTGTACATACCTTGAAAATGAAACAATTCGTTTA
TTTGAATGTAAAGGTGTAGGTTGTTGTAAATATACACCAACTTGTTATTAATCAATTTTT
TGATTAATTATTAAAAACCATCAAAAATATCTGAAAAAAAAA
Length of 3' end seq. 452
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -