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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC611
Library SL
(Link to library)
Clone ID SLC611
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11419-1|Contig-U13205-1
Original site URL
Representative seq. ID SLC611P
(Link to Original site)
Representative DNA sequence 
>SLC611 (SLC611Q) /CSM/SL/SLC6-A/SLC611Q.Seq.d/
AAAAGGTCTTTGTGATGATAAAGATCCATGTACAACCGATCTTTGTGATAAAGGAGTTTG
TACTCACCCAAAAATTACTGATTGTATGGCATGTAATGAAACATTTGCTTGTATTACAAC
AGTATTTTGTGAATATCAGATATGTAGTAGTGATAAAACCCATTGTATTCAAACAGAAAG
AAATTGTGATGATCAAAATGAATGCAGTACTGATTTTTGTCAAAACGATCAATGTTCTCA
TTATTTTCCTAAAGATTGTTTCTTGTGTGGAAATCAAACCTGCCATGATTATGACATATG
CTACCCAGCCTATTGTGATATCAGCACTTCCACTTGTGCCAACACTACTTTGACTTGTGA
CGATAAGGACCCATGTACAAAAGATATTTGTTTTTCAGGAACGGGTTGTGGATTTGTAAC
TATAGATAGGTGTACAAAATGTAATGAAACTGTAGCATGCATTGAAAAGGATTTATGTAA
ATCATTGCAATGTCCTGCCGATGGGTCTGATGAATGTATTTCCTCTGATAAGAATTGTGA
TGATGGTAATCCATGTACATATTCAGAGTGTGATCCTGAAACTGGTTCATGTATAGATTC
ATTCATTGAAGGTTGTTCACTTTGTTCAAAGCCAGGTGTATATXXXXXXXXXXTGTACTC
ATACCCGTATTGCAGGTTGTCGAGCAGTTCCAACAACAACTGGAATAGCACCTCACACTC
ACTATTGTGACTATTGTCATGATACTGAAATATGTATTCTAATTGGTGATGTTCCTACTT
GTGTACCAACATCAACAACATCATCAATACCATTAACAACAGTAACAACAGATATTGAAT
TAGTTGTTACATCTGGTATATATTCCACTGGCCATTTCACTGAAAGTGGAACCACTTTTG
GAGATAAACCCAGTACAACCACGTCAGAATTAGTATCAACAACCTCCTCTACACCTCCTT
ATTACAATCTTTGCGATAGAGTAAGATGCGGTAAAGGTTTAGAATGTTATATGATTGATA
ATAAACCTGAATGTCTACCATCAAATTACCAATGTATGGACTGTTGGGATTTACTTTGTC
ATCTTCAAGATTTATCTTGTAAAATGGTTTTAAATCCCCATTTCATTACTGATAAATATG
GTCAAGTTTGTTGTAAATTCATACCAACGTGTATACCAAGATAAATTAAATTCTAAAACT
ATAGAAATGCATAATTAGGAG
sequence update 1999. 1.13
Translated Amino Acid sequence 
KGLCDDKDPCTTDLCDKGVCTHPKITDCMACNETFACITTVFCEYQICSSDKTHCIQTER
NCDDQNECSTDFCQNDQCSHYFPKDCFLCGNQTCHDYDICYPAYCDISTSTCANTTLTCD
DKDPCTKDICFSGTGCGFVTIDRCTKCNETVACIEKDLCKSLQCPADGSDECISSDKNCD
DGNPCTYSECDPETGSCIDSFIEGCSLCSKPGVY---

---CTHTRIAGCRAVPTTTGIAPHTHYCDYCHDTEICILIGDVPTCVPTSTTSSIPLTTV
TTDIELVVTSGIYSTGHFTESGTTFGDKPSTTTSELVSTTSSTPPYYNLCDRVRCGKGLE
CYMIDNKPECLPSNYQCMDCWDLLCHLQDLSCKMVLNPHFITDKYGQVCCKFIPTCIPR*
ikf*nyrna*lg
Translated Amino Acid sequence (All Frames) 
Frame A:
krsl***rsmynrsl**rslyspkny*lygm**niclyynsil*isdm****nplysnrk
kl**sk*mqy*flskrsmfslfs*rlflvwksnlp*l*hmlpsll*yqhfhlcqhyfdl*
r*gpmykrylffrnglwicnyr*vykm**ncsmh*kgfm*iiamscrwv**myfl**el*
*w*smyifrv*s*nwfmyrfih*rlftlfkarci---

---CTHTRIAGCRAVPTTTGIAPHTHYCDYCHDTEICILIGDVPTCVPTSTTSSIPLTTV
TTDIELVVTSGIYSTGHFTESGTTFGDKPSTTTSELVSTTSSTPPYYNLCDRVRCGKGLE
CYMIDNKPECLPSNYQCMDCWDLLCHLQDLSCKMVLNPHFITDKYGQVCCKFIPTCIPR*
ikf*nyrna*lg

Frame B:
KGLCDDKDPCTTDLCDKGVCTHPKITDCMACNETFACITTVFCEYQICSSDKTHCIQTER
NCDDQNECSTDFCQNDQCSHYFPKDCFLCGNQTCHDYDICYPAYCDISTSTCANTTLTCD
DKDPCTKDICFSGTGCGFVTIDRCTKCNETVACIEKDLCKSLQCPADGSDECISSDKNCD
DGNPCTYSECDPETGSCIDSFIEGCSLCSKPGVY---

---vlipvlqvveqfqqqle*hltltivtivmilkyvf*lvmfllvyqhqqhhqyh*qq*
qqiln*llhlvyiplaislkveplleinpvqprqn*yqqpplhllitifaie*davkv*n
vi*liinlnvyhqitnvwtvgiyfvifkiylvkwf*ipisllinmvkfvvnsyqrvyqdk
lnsktiemhn*e

Frame C:
kvfvmikihvqpifvikefvltqkllivwhvmkhllvlqqyfvniryvvvikpivfkqke
ivmikmnavlifvktinvliiflkivscveikpamimtyatqpivisalplvptll*lvt
irthvqkifvfqervvdl*l*igvqnvmkl*halkriyvnhcnvlpmglmnvfplirivm
mvihvhiqsvilklvhv*ihslkvvhfvqsqvy---

---ysypycrlssssnnnwnstshsll*lls*y*nmysnw*csylctninniintinnsn
nry*iscyiwyifhwpfh*kwnhfwr*tqynhvrisinnllytsllqslr*skmr*rfrm
lyd***t*mstiklpmygllgftlsssrfil*ngfkspfhy**iwssll*ihtnvytkin
*ilkl*kciir
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC611 (SLC611Q) /CSM/SL/SLC6-A/SLC611Q.Seq.d/                       2361   0.0
SFL474 (SFL474Q) /CSM/SF/SFL4-D/SFL474Q.Seq.d/                       1029   0.0
AHJ370 (AHJ370Q) /CSM/AH/AHJ3-C/AHJ370Q.Seq.d/                        680   0.0
SSD562 (SSD562Q) /CSM/SS/SSD5-C/SSD562Q.Seq.d/                         52   2e-05
SLB330 (SLB330Q) /CSM/SL/SLB3-B/SLB330Q.Seq.d/                         52   2e-05
SFK347 (SFK347Q) /CSM/SF/SFK3-B/SFK347Q.Seq.d/                         52   2e-05
SFK324 (SFK324Q) /CSM/SF/SFK3-A/SFK324Q.Seq.d/                         52   2e-05
SFI409 (SFI409Q) /CSM/SF/SFI4-A/SFI409Q.Seq.d/                         52   2e-05
SFG457 (SFG457Q) /CSM/SF/SFG4-C/SFG457Q.Seq.d/                         52   2e-05
SFF707 (SFF707Q) /CSM/SF/SFF7-A/SFF707Q.Seq.d/                         52   2e-05
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061012) Dictyostelium discoideum slug cDNA, clone SLC611.     1275   0.0    1
(AU034605) Dictyostelium discoideum slug cDNA, clone SLC611.     1126   0.0    1
(BJ401592) Dictyostelium discoideum cDNA clone:dds23d20, 3' ...  1029   0.0    1
(BJ409212) Dictyostelium discoideum cDNA clone:dds40a04, 3' ...   720   0.0    1
(BJ353296) Dictyostelium discoideum cDNA clone:dda49l17, 3' ...   539   0.0    3
(BJ390802) Dictyostelium discoideum cDNA clone:dds23d20, 5' ...   500   e-137  1
(AU061445) Dictyostelium discoideum slug cDNA, clone SLE276.       40   6e-04  3
(AU061444) Dictyostelium discoideum slug cDNA, clone SLE275.       40   6e-04  3
(BJ361342) Dictyostelium discoideum cDNA clone:ddc16f21, 5' ...    40   7e-04  3
(BJ389254) Dictyostelium discoideum cDNA clone:dds18i02, 5' ...    40   8e-04  3
dna update 2009. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                168   7e-51
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                155   3e-36
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   114   9e-24
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   114   9e-24
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   113   1e-23
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   113   1e-23
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   110   1e-22
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                104   5e-21
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...    97   9e-19
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 91   1e-16
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLC611 is cyt
5' end seq. ID SLC611F
5' end seq. 
>SLC611F.Seq
AAAAGGTCTTTGTGATGATAAAGATCCATGTACAACCGATCTTTGTGATAAAGGAGTTTG
TACTCACCCAAAAATTACTGATTGTATGGCATGTAATGAAACATTTGCTTGTATTACAAC
AGTATTTTGTGAATATCAGATATGTAGTAGTGATAAAACCCATTGTATTCAAACAGAAAG
AAATTGTGATGATCAAAATGAATGCAGTACTGATTTTTGTCAAAACGATCAATGTTCTCA
TTATTTTCCTAAAGATTGTTTCTTGTGTGGAAATCAAACCTGCCATGATTATGACATATG
CTACCCAGCCTATTGTGATATCAGCACTTCCACTTGTGCCAACACTACTTTGACTTGTGA
CGATAAGGACCCATGTACAAAAGATATTTGTTTTTCAGGAACGGGTTGTGGATTTGTAAC
TATAGATAGGTGTACAAAATGTAATGAAACTGTAGCATGCATTGAAAAGGATTTATGTAA
ATCATTGCAATGTCCTGCCGATGGGTCTGATGAATGTATTTCCTCTGATAAGAATTGTGA
TGATGGTAATCCATGTACATATTCAGAGTGTGATCCTGAAACTGGTTCATGTATAGATTC
ATTCATTGAAGGTTGTTCACTTTGTTCAAAGCCAGGTGTATAT----------
Length of 5' end seq. 643
3' end seq. ID SLC611Z
3' end seq. 
>SLC611Z.Seq
----------TGTACTCATACCCGTATTGCAGGTTGTCGAGCAGTTCCAACAACAACTGG
AATAGCACCTCACACTCACTATTGTGACTATTGTCATGATACTGAAATATGTATTCTAAT
TGGTGATGTTCCTACTTGTGTACCAACATCAACAACATCATCAATACCATTAACAACAGT
AACAACAGATATTGAATTAGTTGTTACATCTGGTATATATTCCACTGGCCATTTCACTGA
AAGTGGAACCACTTTTGGAGATAAACCCAGTACAACCACGTCAGAATTAGTATCAACAAC
CTCCTCTACACCTCCTTATTACAATCTTTGCGATAGAGTAAGATGCGGTAAAGGTTTAGA
ATGTTATATGATTGATAATAAACCTGAATGTCTACCATCAAATTACCAATGTATGGACTG
TTGGGATTTACTTTGTCATCTTCAAGATTTATCTTGTAAAATGGTTTTAAATCCCCATTT
CATTACTGATAAATATGGTCAAGTTTGTTGTAAATTCATACCAACGTGTATACCAAGATA
AATTAAATTCTAAAACTATAGAAATGCATAATTAGGAG
Length of 3' end seq. 568
Connected seq. ID SLC611P
Connected seq. 
>SLC611P.Seq
AAAAGGTCTTTGTGATGATAAAGATCCATGTACAACCGATCTTTGTGATAAAGGAGTTTG
TACTCACCCAAAAATTACTGATTGTATGGCATGTAATGAAACATTTGCTTGTATTACAAC
AGTATTTTGTGAATATCAGATATGTAGTAGTGATAAAACCCATTGTATTCAAACAGAAAG
AAATTGTGATGATCAAAATGAATGCAGTACTGATTTTTGTCAAAACGATCAATGTTCTCA
TTATTTTCCTAAAGATTGTTTCTTGTGTGGAAATCAAACCTGCCATGATTATGACATATG
CTACCCAGCCTATTGTGATATCAGCACTTCCACTTGTGCCAACACTACTTTGACTTGTGA
CGATAAGGACCCATGTACAAAAGATATTTGTTTTTCAGGAACGGGTTGTGGATTTGTAAC
TATAGATAGGTGTACAAAATGTAATGAAACTGTAGCATGCATTGAAAAGGATTTATGTAA
ATCATTGCAATGTCCTGCCGATGGGTCTGATGAATGTATTTCCTCTGATAAGAATTGTGA
TGATGGTAATCCATGTACATATTCAGAGTGTGATCCTGAAACTGGTTCATGTATAGATTC
ATTCATTGAAGGTTGTTCACTTTGTTCAAAGCCAGGTGTATAT----------TGTACTC
ATACCCGTATTGCAGGTTGTCGAGCAGTTCCAACAACAACTGGAATAGCACCTCACACTC
ACTATTGTGACTATTGTCATGATACTGAAATATGTATTCTAATTGGTGATGTTCCTACTT
GTGTACCAACATCAACAACATCATCAATACCATTAACAACAGTAACAACAGATATTGAAT
TAGTTGTTACATCTGGTATATATTCCACTGGCCATTTCACTGAAAGTGGAACCACTTTTG
GAGATAAACCCAGTACAACCACGTCAGAATTAGTATCAACAACCTCCTCTACACCTCCTT
ATTACAATCTTTGCGATAGAGTAAGATGCGGTAAAGGTTTAGAATGTTATATGATTGATA
ATAAACCTGAATGTCTACCATCAAATTACCAATGTATGGACTGTTGGGATTTACTTTGTC
ATCTTCAAGATTTATCTTGTAAAATGGTTTTAAATCCCCATTTCATTACTGATAAATATG
GTCAAGTTTGTTGTAAATTCATACCAACGTGTATACCAAGATAAATTAAATTCTAAAACT
ATAGAAATGCATAATTAGGAG
Length of connected seq. 1211
Full length Seq ID -
Full length Seq. -
Length of full length seq. -