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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC590
Library SL
(Link to library)
Clone ID SLC590
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID SLC590Z
(Link to Original site)
Representative DNA sequence 
>SLC590 (SLC590Q) /CSM/SL/SLC5-D/SLC590Q.Seq.d/
XXXXXXXXXXTTAGTAGGTCCACTCCACACCCAAAGCGCTGTTAAAGAATTCACTGAAGG
TCTTGAAGAAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATAT
CAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATCGT
AAAGACTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTCAAAAATCTTGACGATGC
TTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCA
AAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAA
TGTAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGG
TGGTAGAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGTACTAATACAAT
CAACTATGGTAATACTATGCCATTATCACAAGGTATCAATTTTAACTAAAATTACCAAAA
AAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATTGTTGATATTTGTTCA
TAA
sequence update 1998. 5. 9
Translated Amino Acid sequence 
---VGPLHTQSAVKEFTEGLEEIKKQGGKVVIGGNKLDISGGNFVEPTVVAIEHDAPIVK
TELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKWLGPTGSDCGIVNVNV
ATNGAEIGGAFGGEKETGGGRESGSDSWKQYCRRSTNTINYGNTMPLSQGINFN*nyqkk
ktkcnlhninkrillifvh
Translated Amino Acid sequence (All Frames) 
Frame A:
---**vhstpkallknslkvlkk*kskvvrsslvvinsisvvetllnqpslplnmmlqs*
rlnslfqfst**nskiltmllpgimkshkvshlpssqtikrissngldlpdltvv*lt*m
*lqtvlklvvplevkkrpevvenlaqtagnsiavvvliqstmvilchyhkvsiltkitkk
kkpnvtyit*ikeyc*ylfi


Frame B:
---srstphpkrc*rih*rs*rnkkarw*grhww**tryqwwklc*tnrrch*t*csnrk
d*tlcsnslhneiqks*rcfcle**sptrslifplhkqskeylqmawtyri*lwys*rkc
sykrc*nwwclwr*krdrrw*riwlrqletvlps*y*ynqlw*yyaiitryqf*lklpkk
knqm*lt*hk*knivdics*


Frame C:
---VGPLHTQSAVKEFTEGLEEIKKQGGKVVIGGNKLDISGGNFVEPTVVAIEHDAPIVK
TELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIFKWLGPTGSDCGIVNVNV
ATNGAEIGGAFGGEKETGGGRESGSDSWKQYCRRSTNTINYGNTMPLSQGINFN*nyqkk
ktkcnlhninkrillifvh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH643 (SLH643Q) /CSM/SL/SLH6-B/SLH643Q.Seq.d/                       1104   0.0
SLG622 (SLG622Q) /CSM/SL/SLG6-A/SLG622Q.Seq.d/                       1104   0.0
SLC819 (SLC819Q) /CSM/SL/SLC8-A/SLC819Q.Seq.d/                       1104   0.0
SLC590 (SLC590Q) /CSM/SL/SLC5-D/SLC590Q.Seq.d/                       1104   0.0
SLC178 (SLC178Q) /CSM/SL/SLC1-D/SLC178Q.Seq.d/                       1104   0.0
SLB182 (SLB182Q) /CSM/SL/SLB1-D/SLB182Q.Seq.d/                       1104   0.0
SLA722 (SLA722Q) /CSM/SL/SLA7-A/SLA722Q.Seq.d/                       1104   0.0
SLA115 (SLA115Q) /CSM/SL/SLA1-A/SLA115Q.Seq.d/                       1104   0.0
SLE408 (SLE408Q) /CSM/SL/SLE4-A/SLE408Q.Seq.d/                       1100   0.0
SLE339 (SLE339Q) /CSM/SL/SLE3-B/SLE339Q.Seq.d/                       1096   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...  1043   0.0    2
(AU052145) Dictyostelium discoideum slug cDNA, clone SLA115.     1043   0.0    2
(AU039868) Dictyostelium discoideum slug cDNA, clone SLG622.     1043   0.0    2
(AU039362) Dictyostelium discoideum slug cDNA, clone SLH643.     1043   0.0    2
(AU034959) Dictyostelium discoideum slug cDNA, clone SLE408.     1043   0.0    2
(AU034596) Dictyostelium discoideum slug cDNA, clone SLC590.     1043   0.0    2
(AU034467) Dictyostelium discoideum slug cDNA, clone SLC178.     1043   0.0    2
(AU034398) Dictyostelium discoideum slug cDNA, clone SLC819.     1043   0.0    2
(AU033989) Dictyostelium discoideum slug cDNA, clone SLB703.     1043   0.0    2
(AU033573) Dictyostelium discoideum slug cDNA, clone SLB182.     1043   0.0    2
dna update 2009. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   280   2e-74
AY250704_1(AY250704|pid:none) Glycine max aldehyde dehydrogenase...   190   2e-47
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   180   3e-44
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   178   9e-44
EF145268_1(EF145268|pid:none) Populus trichocarpa clone WS01122_...   178   1e-43
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   176   4e-43
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   175   7e-43
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   173   3e-42
AK145873_1(AK145873|pid:none) Mus musculus 14 days embryo liver ...   172   5e-42
(Q9DBF1) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   172   5e-42
protein update 2009. 6. 2
PSORT 

 psg: 0.50  gvh: 0.30  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLC590 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC590Z
3' end seq. 
>SLC590Z.Seq
----------TTAGTAGGTCCACTCCACACCCAAAGCGCTGTTAAAGAATTCACTGAAGG
TCTTGAAGAAATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATAT
CAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATCGT
AAAGACTGAACTCTTTGTTCCAATTCTCTACATAATGAAATTCAAAAATCTTGACGATGC
TTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCA
AAAGAATATCTTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAA
TGTAGCTACAAACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTGAAAAAGAGACCGGAGG
TGGTAGAGAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGTACTAATACAAT
CAACTATGGTAATACTATGCCATTATCACAAGGTATCAATTTTAACTAAAATTACCAAAA
AAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATATTGTTGATATTTGTTCA
TAA
Length of 3' end seq. 593
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -