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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC586
Library SL
(Link to library)
Clone ID SLC586
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16276-1
Original site URL
Representative seq. ID SLC586Z
(Link to Original site)
Representative DNA sequence 
>SLC586 (SLC586Q) /CSM/SL/SLC5-D/SLC586Q.Seq.d/
XXXXXXXXXXCATCAACCTTTGTTCTGGATGAATTCAAACGTACCTACTCCAACAATGAA
GTCTCCATGTCCATTCCATGGTTCTTTGAACACTTTGACAAGGAAGGTTTCTCTGTCTAC
CAATGTACCTACCAATACAATCACGAATTAGGTCCAGTCTTCAAAACTTGCAACTTGGTT
GGTGGTTTCTTCCAAAGACTCGAAACTCTCCACAAATACGCTTTCGCCTCTATGATCATT
TTCGGTGAAGAACAAGGTGGTGCCGTCAAAGATCAAACCGTCTCTGGTCTCTGGGTTTTC
CGTGGTCAAGATTTACCAGCTGACATGAAAGATTGTGATGATTCTTTAGTCTATGACTGG
AAGAAACTCGATGTTGCTGCTGATAAAGCTATCATTGAATCTTTCCTTGCTTGGGAAGAT
AAAAACGGTGGTTTCGCTGGTAAGAAATTCTTACAAGGTAAATTATACAAATAAATTAAT
TTAAATTTAATTTAAAATTTTTTTA
sequence update 1998. 5. 9
Translated Amino Acid sequence 
---STFVLDEFKRTYSNNEVSMSIPWFFEHFDKEGFSVYQCTYQYNHELGPVFKTCNLVG
GFFQRLETLHKYAFASMIIFGEEQGGAVKDQTVSGLWVFRGQDLPADMKDCDDSLVYDWK
KLDVAADKAIIESFLAWEDKNGGFAGKKFLQGKLYK*inlnli*nff
Translated Amino Acid sequence (All Frames) 
Frame A:
---inlcsg*iqtyllqq*slhvhsmvl*tl*qgrflclpmylpiqsrirsslqnlqlgw
wflpktrnspqirfrlydhfr*rtrwcrqrsnrlwslgfpwsrfts*herl**ffsl*le
etrccc**syh*ifpclgr*krwfrw*eiltr*iiqin*fkfnlkff


Frame B:
---STFVLDEFKRTYSNNEVSMSIPWFFEHFDKEGFSVYQCTYQYNHELGPVFKTCNLVG
GFFQRLETLHKYAFASMIIFGEEQGGAVKDQTVSGLWVFRGQDLPADMKDCDDSLVYDWK
KLDVAADKAIIESFLAWEDKNGGFAGKKFLQGKLYK*inlnli*nff


Frame C:
---qplfwmnsnvptptmkspcpfhgslntltrkvslstnvptntitn*vqssklatwlv
vsskdsklstntlspl*sfsvknkvvpskikpslvsgfsvvkiyqlt*kivmil*smtgr
nsmllliklslnlsllgkiktvvslvrnsykvnytnkli*i*fkifl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC586 (SLC586Q) /CSM/SL/SLC5-D/SLC586Q.Seq.d/                        888   0.0
VFN290 (VFN290Q) /CSM/VF/VFN2-D/VFN290Q.Seq.d/                        880   0.0
VFN153 (VFN153Q) /CSM/VF/VFN1-C/VFN153Q.Seq.d/                        880   0.0
VFM141 (VFM141Q) /CSM/VF/VFM1-B/VFM141Q.Seq.d/                        880   0.0
VFL452 (VFL452Q) /CSM/VF/VFL4-C/VFL452Q.Seq.d/                        880   0.0
VFL423 (VFL423Q) /CSM/VF/VFL4-A/VFL423Q.Seq.d/                        880   0.0
VFL213 (VFL213Q) /CSM/VF/VFL2-A/VFL213Q.Seq.d/                        880   0.0
VFL147 (VFL147Q) /CSM/VF/VFL1-B/VFL147Q.Seq.d/                        880   0.0
VFJ212 (VFJ212Q) /CSM/VF/VFJ2-A/VFJ212Q.Seq.d/                        880   0.0
VFI711 (VFI711Q) /CSM/VF/VFI7-A/VFI711Q.Seq.d/                        880   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034594) Dictyostelium discoideum slug cDNA, clone SLC586.      888   0.0    1
(AU284390) Dictyostelium discoideum gamete cDNA clone:FC-AR0...   880   0.0    1
(AU284382) Dictyostelium discoideum gamete cDNA clone:FC-AQ1...   880   0.0    1
(AU284283) Dictyostelium discoideum gamete cDNA clone:FC-AH1...   880   0.0    1
(AU053553) Dictyostelium discoideum slug cDNA, clone SLI895.      880   0.0    1
(AU052950) Dictyostelium discoideum slug cDNA, clone SLF370.      880   0.0    1
(AU052937) Dictyostelium discoideum slug cDNA, clone SLF351.      880   0.0    1
(AU052864) Dictyostelium discoideum slug cDNA, clone SLF228.      880   0.0    1
(AU052863) Dictyostelium discoideum slug cDNA, clone SLF226.      880   0.0    1
(AU052454) Dictyostelium discoideum slug cDNA, clone SLD345.      880   0.0    1
dna update 2009. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT080927_1(BT080927|pid:none) Caligus clemensi clone ccle-evs-51...   140   2e-32
(Q6PE25) RecName: Full=Elongation factor 1-gamma;          Short...   138   6e-32
AY099512_1(AY099512|pid:none) Danio rerio eukaryotic translation...   138   6e-32
DQ680344_1(DQ680344|pid:none) Argiope argentata elongation facto...   137   2e-31
AY737542_1(AY737542|pid:none) Toxoptera citricida putative trans...   136   2e-31
DQ448229_1(DQ448229|pid:none) Artemia franciscana clone 13RP10.0...   136   3e-31
(P12261) RecName: Full=Elongation factor 1-gamma;          Short...   135   4e-31
AF148813_1(AF148813|pid:none) Drosophila melanogaster translatio...   135   5e-31
(Q9NJH0) RecName: Full=Elongation factor 1-gamma;          Short...   135   5e-31
DQ680342_1(DQ680342|pid:none) Hypochilus thorelli elongation fac...   135   5e-31
protein update 2009. 6. 2
PSORT 

 psg: 0.61  gvh: 0.41  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLC586 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLC586Z
3' end seq. 
>SLC586Z.Seq
----------CATCAACCTTTGTTCTGGATGAATTCAAACGTACCTACTCCAACAATGAA
GTCTCCATGTCCATTCCATGGTTCTTTGAACACTTTGACAAGGAAGGTTTCTCTGTCTAC
CAATGTACCTACCAATACAATCACGAATTAGGTCCAGTCTTCAAAACTTGCAACTTGGTT
GGTGGTTTCTTCCAAAGACTCGAAACTCTCCACAAATACGCTTTCGCCTCTATGATCATT
TTCGGTGAAGAACAAGGTGGTGCCGTCAAAGATCAAACCGTCTCTGGTCTCTGGGTTTTC
CGTGGTCAAGATTTACCAGCTGACATGAAAGATTGTGATGATTCTTTAGTCTATGACTGG
AAGAAACTCGATGTTGCTGCTGATAAAGCTATCATTGAATCTTTCCTTGCTTGGGAAGAT
AAAAACGGTGGTTTCGCTGGTAAGAAATTCTTACAAGGTAAATTATACAAATAAATTAAT
TTAAATTTAATTTAAAATTTTTTTA
Length of 3' end seq. 495
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -