AFK218
Library AF
(Link to library)
Clone ID AFK218
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID AFK218Z
(Link to Original site)
Representative DNA sequence
>AFK218 (AFK218Q) /CSM/AF/AFK2-A/AFK218Q.Seq.d/
XXXXXXXXXXAAAGTTTCCATTCAATTGATGGAATTTGAAGATGCCTTAAAGTATCGTTT
CAATCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGG
TCGTATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTT
CTCACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCG
TCTCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCC
AGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCAT
GGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCC
AGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCA
ACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTC
TGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCAT
CAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGC
TCGTTTATGTAAGGGTCTGGTATTATGTTAANACGTCATCAAATNCGCGCTAGATCAAAC
T
sequence update 2001. 6. 1
Translated Amino Acid sequence
---VSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFS
PSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMA
VNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSE
DAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLVLC*xvikxaldqt


Translated Amino Acid sequence (All Frames)
Frame A:
---kfpfn*wnlkmp*sivsihsm*qrfghtktih*fklvvwf*iviqritllklnklps
hhptwfqvlnhhqircykvvssliqiliviv*v*tinksqsivhsp*rvvlkttnvmvsw
lsmvmvvkvqtinqtlsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyidscl
kmpnlvssli*svtcpvspskkfkfvpfqtftrltki*vlvyvrvwyyvxtssnxr*ik


Frame B:
---sfhsidgi*rclkvsfqsircnkdlvtqrlsinsnwsygfes*srellc*s*tscll
tiphgsry*titr*dvtrsslllsryssssfrcklstnpsqlsirrkgwc*klpt*wfhg
cqw*ww*rsklstklfrwsratsricst*i*rlwfrcsstiqssk*rlcstr*fi*thv*
rcqisfrl*fsrshvrchhqrnssscrfkllqg*qrfrcsfm*gsgimlxrhqxrarsn


Frame C:
---VSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFS
PSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMA
VNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSE
DAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLVLC*xvikxaldqt


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK218 (AFK218Q) /CSM/AF/AFK2-A/AFK218Q.Seq.d/ 1398 0.0
SFL238 (SFL238Q) /CSM/SF/SFL2-B/SFL238Q.Seq.d/ 1360 0.0
AFD795 (AFD795Q) /CSM/AF/AFD7-D/AFD795Q.Seq.d/ 1360 0.0
AFE376 (AFE376Q) /CSM/AF/AFE3-D/AFE376Q.Seq.d/ 1354 0.0
AFD822 (AFD822Q) /CSM/AF/AFD8-A/AFD822Q.Seq.d/ 1354 0.0
AFO835 (AFO835Q) /CSM/AF/AFO8-B/AFO835Q.Seq.d/ 1352 0.0
CFI634 (CFI634Q) /CSM/CF/CFI6-B/CFI634Q.Seq.d/ 1348 0.0
CFI568 (CFI568Q) /CSM/CF/CFI5-C/CFI568Q.Seq.d/ 1348 0.0
AFE574 (AFE574Q) /CSM/AF/AFE5-D/AFE574Q.Seq.d/ 1348 0.0
AFI610 (AFI610Q) /CSM/AF/AFI6-A/AFI610Q.Seq.d/ 1342 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1324 0.0 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1324 0.0 2
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 82 7e-15 2
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 8e-15 2
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 8e-15 2
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 86 7e-13 1
CC133697|CC133697.1 NDL.83G19.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.83G19, DNA sequence. 46 3e-12 5
BX554266|BX554266.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse14d06_q1c. 74 3e-09 1
BX564920|BX564920.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse74e09_q1c. 74 3e-09 1
BX554380|BX554380.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse15b01_q1c. 74 3e-09 1
dna update 2003. 9. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 469 e-131
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 273 5e-72
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 273 5e-72
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 269 5e-71
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 261 1e-68
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 259 7e-68
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 258 9e-68
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 255 1e-66
(Q9PWF7) RecName: Full=Catalase; EC=1.11.1.6; &AB03187... 251 2e-65
AY242059_1(AY242059|pid:none) Melopsittacus undulatus catalase (... 246 4e-64
protein update 2009. 4.24
PSORT

psg: 0.75 gvh: 0.22 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
20.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for AFK218 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFK218Z
3' end seq.
>AFK218Z.Seq
----------AAAGTTTCCATTCAATTGATGGAATTTGAAGATGCCTTAAAGTATCGTTT
CAATCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGG
TCGTATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTT
CTCACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCG
TCTCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCC
AGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCAT
GGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCC
AGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCA
ACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTC
TGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCAT
CAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGC
TCGTTTATGTAAGGGTCTGGTATTATGTTAANACGTCATCAAATNCGCGCTAGATCAAAC
T
Length of 3' end seq. 711
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -