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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC575
Library SL
(Link to library)
Clone ID SLC575
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16325-1
Original site URL
Representative seq. ID SLC575E
(Link to Original site)
Representative DNA sequence 
>SLC575 (SLC575Q) /CSM/SL/SLC5-D/SLC575Q.Seq.d/
AACAATTTACATCAAGAAAACAATGATAATTTGGGTGATGGTTTTTATGATGGTGTTGAA
ATTGGTTTCGCTGACGGAGGTTTCGACGTAAACGATCTCAATGGTTTTTAAAAAAAAAAA
AAAAAATAATTATTAAATTTTTAAAATTATAAATAATAATCTTCTTATGAAAA
sequence update 1998. 5. 9
Translated Amino Acid sequence 
NNLHQENNDNLGDGFYDGVEIGFADGGFDVNDLNGF*kkkkk*llnf*nyk**ssye
Translated Amino Acid sequence (All Frames) 
Frame A:
NNLHQENNDNLGDGFYDGVEIGFADGGFDVNDLNGF*kkkkk*llnf*nyk**ssye


Frame B:
tiyikktmiiwvmvfmmvlklvsltevst*tismvfkkkkknny*ifkiinnnllmk


Frame C:
qftsrkq**fg*wfl*wc*nwfr*rrfrrkrsqwflkkkkkiiikflkl*iiifl*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL640 (SSL640Q) /CSM/SS/SSL6-B/SSL640Q.Seq.d/                        216   8e-56
SSL233 (SSL233Q) /CSM/SS/SSL2-B/SSL233Q.Seq.d/                        216   8e-56
SSH108 (SSH108Q) /CSM/SS/SSH1-A/SSH108Q.Seq.d/                        216   8e-56
SLK834 (SLK834Q) /CSM/SL/SLK8-B/SLK834Q.Seq.d/                        216   8e-56
SLI883 (SLI883Q) /CSM/SL/SLI8-D/SLI883Q.Seq.d/                        216   8e-56
SLI409 (SLI409Q) /CSM/SL/SLI4-A/SLI409Q.Seq.d/                        216   8e-56
SLI370 (SLI370Q) /CSM/SL/SLI3-C/SLI370Q.Seq.d/                        216   8e-56
SLI347 (SLI347Q) /CSM/SL/SLI3-B/SLI347Q.Seq.d/                        216   8e-56
SLI291 (SLI291Q) /CSM/SL/SLI2-D/SLI291Q.Seq.d/                        216   8e-56
SLI170 (SLI170Q) /CSM/SL/SLI1-C/SLI170Q.Seq.d/                        216   8e-56
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034586) Dictyostelium discoideum slug cDNA, clone SLC575.      216   8e-54  2
(AU053333) Dictyostelium discoideum slug cDNA, clone SLI409.      216   1e-53  2
(AU038601) Dictyostelium discoideum slug cDNA, clone SSL233.      216   1e-53  2
(AU052355) Dictyostelium discoideum slug cDNA, clone SLD187.      216   2e-53  2
(AU053301) Dictyostelium discoideum slug cDNA, clone SLI347.      216   2e-53  2
(AU039583) Dictyostelium discoideum slug cDNA, clone SLE787.      216   2e-53  2
(AU062090) Dictyostelium discoideum slug cDNA, clone SLH520.      216   2e-53  2
(AU037968) Dictyostelium discoideum slug cDNA, clone SSH108.      216   2e-53  2
(AU052457) Dictyostelium discoideum slug cDNA, clone SLD351.      216   2e-53  2
(AU052420) Dictyostelium discoideum slug cDNA, clone SLD286.      216   3e-53  2
dna update 2009. 3. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    82   4e-15
EF371498_5(EF371498|pid:none) Myxococcus fulvus HW-1 MtsA (mtsA)...    32   9.0
protein update 2009. 3. 4
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLC575 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLC575E
Full length Seq. 
>SLC575E.Seq
AACAATTTACATCAAGAAAACAATGATAATTTGGGTGATGGTTTTTATGATGGTGTTGAA
ATTGGTTTCGCTGACGGAGGTTTCGACGTAAACGATCTCAATGGTTTTTAAAAAAAAAAA
AAAAAATAATTATTAAATTTTTAAAATTATAAATAATAATCTTCTTATGAAAA
Length of full length seq. 173