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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLC566
Library SL
(Link to library)
Clone ID SLC566
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U08448-1
Original site URL
Representative seq. ID SLC566E
(Link to Original site)
Representative DNA sequence 
>SLC566 (SLC566Q) /CSM/SL/SLC5-C/SLC566Q.Seq.d/
ATGGTAGTGATTTAGTATTTTTAAATGATTTATTCGAGTATAATACTATAGAGAATAAAT
GGACCCAATTAAAGGGTACTGGCGACCACCCACCTCAGAAATGCGGTCATAAGCTATTCA
ATTTCGGTGGTAAATTATTATTATTTGGTGGTGGATATGGCTCACAATGGGATATTAAAT
ATAATGATGTTCATATCTATGACAGATCTTTAAATAGGTGGACAAAAGTTAAAACAAAGG
GAGAAATCAACGTTTGTACATTTACTGTTAGTTGGAGTGTTGGTCCATTTCTTTTCATCT
ATGGTGGTCAATCTGTTAAAGATGATCTATTAACTAATGATCTCTATATGTTAGATACTG
TAAATATGGAATGGAGTTCTATCAATACAAATTGTACACCTTTTCCACGTGATATGGGTT
CTGGTGTATTAGTTGGTTCAACACTTTATATGTTTGGTGGTTTCTCTTCAACACCATTAG
ATAGTTTATTCTCTTTAGATTTATTAAAAGATGAAAATTTAAATATATCACCTTCTCCAA
ATATTTAATAAAAAAAAAAAATAAAATAAAATAAAATAAAAATGAAACCAAACGATTTTA
ACCGAAAAA
sequence update 1999. 6.18
Translated Amino Acid sequence 
GSDLVFLNDLFEYNTIENKWTQLKGTGDHPPQKCGHKLFNFGGKLLLFGGGYGSQWDIKY
NDVHIYDRSLNRWTKVKTKGEINVCTFTVSWSVGPFLFIYGGQSVKDDLLTNDLYMLDTV
NMEWSSINTNCTPFPRDMGSGVLVGSTLYMFGGFSSTPLDSLFSLDLLKDENLNISPSPN
I**kkkik*nkikmkpndfnrk
Translated Amino Acid sequence (All Frames) 
Frame A:
mvvi*yf*miyssiil*ringpn*rvlatthlrnavisysisvvnyyylvvdmahngiln
immfismtdl*iggqklkqrekstfvhlllvgvlvhffssmvvnllkmiy*lmisic*il
*iwngvlsiqivhlfhviwvlvy*lvqhficlvvslqhh*ivysl*iy*kmki*iyhllq
ifnkkkk*nkik*k*nqtiltek


Frame B:
w**fsifk*firv*yyre*mdpikgywrpptsemrs*aiqfrw*iiiiwwwiwltmgy*i
**csyl*qifk*vdks*nkgrnqrlyiyc*lecwsisfhlwwsic*r*sin**slyvryc
kygmefyqyklytfst*ygfwciswfntlyvwwflfntir*filfrfikr*kfkyitfsk
ylikkknkik*nknetkrf*pk


Frame C:
GSDLVFLNDLFEYNTIENKWTQLKGTGDHPPQKCGHKLFNFGGKLLLFGGGYGSQWDIKY
NDVHIYDRSLNRWTKVKTKGEINVCTFTVSWSVGPFLFIYGGQSVKDDLLTNDLYMLDTV
NMEWSSINTNCTPFPRDMGSGVLVGSTLYMFGGFSSTPLDSLFSLDLLKDENLNISPSPN
I**kkkik*nkikmkpndfnrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLC566 (SLC566Q) /CSM/SL/SLC5-C/SLC566Q.Seq.d/                       1088   0.0
AHF172 (AHF172Q) /CSM/AH/AHF1-C/AHF172Q.Seq.d/                         44   0.002
SHA249 (SHA249Q) /CSM/SH/SHA2-C/SHA249Q.Seq.d/                         42   0.010
AHP783 (AHP783Q) /CSM/AH/AHP7-D/AHP783Q.Seq.d/                         38   0.15
VHD158 (VHD158Q) /CSM/VH/VHD1-C/VHD158Q.Seq.d/                         36   0.60
VHB633 (VHB633Q) /CSM/VH/VHB6-B/VHB633Q.Seq.d/                         36   0.60
VFM146 (VFM146Q) /CSM/VF/VFM1-B/VFM146Q.Seq.d/                         36   0.60
SSI309 (SSI309Q) /CSM/SS/SSI3-A/SSI309Q.Seq.d/                         36   0.60
SSB652 (SSB652Q) /CSM/SS/SSB6-C/SSB652Q.Seq.d/                         36   0.60
SLE744 (SLE744Q) /CSM/SL/SLE7-B/SLE744Q.Seq.d/                         36   0.60
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...  1088   0.0    1
(AU060999) Dictyostelium discoideum slug cDNA, clone SLC566.     1088   0.0    1
(AU034312) Dictyostelium discoideum slug cDNA, clone SLC566.      735   0.0    1
(FB676000) Sequence 3 from Patent WO2007118704.                    38   0.016  3
(DX521502) GH_MBb0030A05f GH_MBb Gossypium hirsutum genomic ...    50   0.097  1
(ES749980) BGBV-aad64g12.b1 Snail_EST_pSMART Biomphalaria gl...    46   0.15   2
(BJ333173) Dictyostelium discoideum cDNA clone:dda41o17, 5' ...    44   0.15   2
(FB676004) Sequence 7 from Patent WO2007118704.                    38   0.20   3
(EK043752) 1092959537994 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.38   1
(AM433440) Vitis vinifera contig VV78X138200.7, whole genome...    38   0.39   3
dna update 2009. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115607_4(AC115607|pid:none) Dictyostelium discoideum chromosom...   287   2e-76
AK097719_1(AK097719|pid:none) Homo sapiens cDNA FLJ40400 fis, cl...    59   1e-07
EU956778_1(EU956778|pid:none) Zea mays clone 1573668 kelch motif...    56   7e-07
AC092557_12(AC092557|pid:none) Oryza sativa chromosome 3 BAC OSJ...    56   7e-07
BT060837_1(BT060837|pid:none) Zea mays full-length cDNA clone ZM...    56   7e-07
AP003578_15(AP003578|pid:none) Oryza sativa Japonica Group genom...    55   1e-06
BC068372_1(BC068372|pid:none) Danio rerio zgc:85727, mRNA (cDNA ...    55   1e-06
BT069267_1(BT069267|pid:none) Zea mays full-length cDNA clone ZM...    55   2e-06
(Q9BQ90) RecName: Full=Kelch domain-containing protein 3; AltNam...    54   3e-06
BC009460_1(BC009460|pid:none) Homo sapiens kelch domain containi...    54   3e-06
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.59  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SLC566 is cyt
5' end seq. ID SLC566F
5' end seq. 
>SLC566F.Seq
ATGGTAGTGATTTAGTATTTTTAAATGATTTATTCGAGTATAATACTATAGAGAATAAAT
GGACCCAATTAAAGGGTACTGGCGACCACCCACCTCAGAAATGCGGTCATAAGCTATTCA
ATTTCGGTGGTAAATTATTATTATTTGGTGGTGGATATGGCTCACAATGGGATATTAAAT
ATAATGATGTTCATATCTATGACAGATCTTTAAATAGGTGGACAAAAGTTAAAACAAAGG
GAGAAATCAACGTTTGTACATTTACTGTTAGTTGGAGTGTTGGTCCATTTCTTTTCATCT
ATGGTGGTCAATCTGTTAAAGATGATCTATTAACTAATGATCTCTATATGTTAGATACTG
TAAATATGGAATGGAGTTCTATCAATACAAATTGTACACCTTTTCCACGTGATATGGGTT
CTGGTGTATTAGTTGGTTCAACACTTTATATGTTTGGTGGTTTCTCTTCAACACCATTAG
ATAGTTTATTCTCTTTAGATTTATTAAAAGATGAAAATTTAAATATATCACCTTCTCCAA
ATATTTAATAAAA----------
Length of 5' end seq. 553
3' end seq. ID SLC566Z
3' end seq. 
>SLC566Z.Seq
----------ATATAATGATGTTCATATCTATGACAGATCTTTAAATAGGTGGACAAAAG
TTAAAACAAAGGGAGAAATCAACGTTTGTACATTTACTGTTAGTTGGAGTGTTGGTCCAT
TTCTTTTCATCTATGGTGGTCAATCTGTTAAAGATGATCTATTAACTAATGATCTCTATA
TGTTAGATACTGTAAATATGGAATGGAGTTCTATCAATACAAATTGTACACCTTTTCCAC
GTGATATGGGTTCTGGTGTATTAGTTGGTTCAACACTTTATATGTTTGGTGGTTTCTCTT
CAACACCATTAGATAGTTTATTCTCTTTAGATTTATTAAAAGATGAAAATTTAAATATAT
CACCTTCTCCAAATATTTAATAAAAAAAAAAAATAAAATAAAATAAAATAAAAATGAAAC
CAAACGATTTTAACCGAAAAA
Length of 3' end seq. 431
Connected seq. ID SLC566P
Connected seq. 
>SLC566P.Seq
ATGGTAGTGATTTAGTATTTTTAAATGATTTATTCGAGTATAATACTATAGAGAATAAAT
GGACCCAATTAAAGGGTACTGGCGACCACCCACCTCAGAAATGCGGTCATAAGCTATTCA
ATTTCGGTGGTAAATTATTATTATTTGGTGGTGGATATGGCTCACAATGGGATATTAAAT
ATAATGATGTTCATATCTATGACAGATCTTTAAATAGGTGGACAAAAGTTAAAACAAAGG
GAGAAATCAACGTTTGTACATTTACTGTTAGTTGGAGTGTTGGTCCATTTCTTTTCATCT
ATGGTGGTCAATCTGTTAAAGATGATCTATTAACTAATGATCTCTATATGTTAGATACTG
TAAATATGGAATGGAGTTCTATCAATACAAATTGTACACCTTTTCCACGTGATATGGGTT
CTGGTGTATTAGTTGGTTCAACACTTTATATGTTTGGTGGTTTCTCTTCAACACCATTAG
ATAGTTTATTCTCTTTAGATTTATTAAAAGATGAAAATTTAAATATATCACCTTCTCCAA
ATATTTAATAAAA----------ATATAATGATGTTCATATCTATGACAGATCTTTAAAT
AGGTGGACAAAAGTTAAAACAAAGGGAGAAATCAACGTTTGTACATTTACTGTTAGTTGG
AGTGTTGGTCCATTTCTTTTCATCTATGGTGGTCAATCTGTTAAAGATGATCTATTAACT
AATGATCTCTATATGTTAGATACTGTAAATATGGAATGGAGTTCTATCAATACAAATTGT
ACACCTTTTCCACGTGATATGGGTTCTGGTGTATTAGTTGGTTCAACACTTTATATGTTT
GGTGGTTTCTCTTCAACACCATTAGATAGTTTATTCTCTTTAGATTTATTAAAAGATGAA
AATTTAAATATATCACCTTCTCCAAATATTTAATAAAAAAAAAAAATAAAATAAAATAAA
ATAAAAATGAAACCAAACGATTTTAACCGAAAAA
Length of connected seq. 984
Full length Seq ID SLC566E
Full length Seq. 
>SLC566E.Seq
ATGGTAGTGATTTAGTATTTTTAAATGATTTATTCGAGTATAATACTATAGAGAATAAAT
GGACCCAATTAAAGGGTACTGGCGACCACCCACCTCAGAAATGCGGTCATAAGCTATTCA
ATTTCGGTGGTAAATTATTATTATTTGGTGGTGGATATGGCTCACAATGGGATATTAAAT
ATAATGATGTTCATATCTATGACAGATCTTTAAATAGGTGGACAAAAGTTAAAACAAAGG
GAGAAATCAACGTTTGTACATTTACTGTTAGTTGGAGTGTTGGTCCATTTCTTTTCATCT
ATGGTGGTCAATCTGTTAAAGATGATCTATTAACTAATGATCTCTATATGTTAGATACTG
TAAATATGGAATGGAGTTCTATCAATACAAATTGTACACCTTTTCCACGTGATATGGGTT
CTGGTGTATTAGTTGGTTCAACACTTTATATGTTTGGTGGTTTCTCTTCAACACCATTAG
ATAGTTTATTCTCTTTAGATTTATTAAAAGATGAAAATTTAAATATATCACCTTCTCCAA
ATATTTAATAAAAAAAAAAAATAAAATAAAATAAAATAAAAATGAAACCAAACGATTTTA
ACCGAAAAA
Length of full length seq. 609